Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq122 174 2e-38 seq83 84.2 2e-11 >seq122 Length=4874392 Score = 174 bits (192), Expect = 2e-38 Identities = 284/404 (70%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 58355 GTTGATCTGAACACCGTAGTCAGTACGGCGCTCGCGGTTGTTCTCAATACCACGGTTGTT 58414 ||| | ||| || |||||||| || | ||| |||||||| |||| || |||||||| Sbjct 2806278 GTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTT 2806219 Query 58415 CTTCAGCACGATCATGTCATCGAACTGGAAGTGCCACATCGGGTAATACATGGTTGCTGA 58474 ||||||||| | || | || | | | |||||||| ||||| ||| ||| |||| Sbjct 2806218 CTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGC 2806159 Query 58475 GCCGCCACGGATACCACCCTGAGAACAGCTCTTCAGATCACCAACGAACTTCTTGATGAA 58534 ||||| || | || |||||||| ||| ||||| | ||| | ||| ||| Sbjct 2806158 ACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAA 2806099 Query 58535 CGGGATCGTACCGGTATG-AGTCATCTCACCGTCGCGGATAGAGGAACCCAGGGCACGGA 58593 ||| || ||||| || | | | |||||| ||||||| | | ||||| ||||||| Sbjct 2806098 CGGAATGCAGCCGGTGTGGAATGCT-TCACCGCCGCGGATCGGGCTGCCCAGCGCACGGA 2806040 Query 58594 TAGCG-CCGAAGTCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTG 58652 | ||| ||| || || |||||||| ||||||| ||| ||||| ||||| || ||| || Sbjct 2806039 T-GCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTG 2805981 Query 58653 CCAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAAC 58712 || || ||||| || ||| |||| || ||| ||||| || || ||||||||| Sbjct 2805980 GAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAAC 2805921 Query 58713 TGACGGGTACGGGTACGCACGCCTGCCATGATAGGTGTTGGGAG 58756 || || || |||| |||||||| | ||| || || || || || Sbjct 2805920 TGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 2805877 >seq83 Length=912621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 260/400 (65%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 58355 GTTGATCTGAACACCGTAGTCAGTACGGCGCTCGCGGTTGTTCTCAATACCACGGTTGTT 58414 |||||| || || ||||| || | || | ||||| |||| ||||||||| || Sbjct 580180 GTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATT 580121 Query 58415 CTTCAGCACGATCATGTCATCGAACTGGAAGTGCCACATCGGGTAATACATGGTTGCTGA 58474 ||||| || | | | || | | ||||||||||| |||||| ||| || || | Sbjct 580120 TTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGC 580061 Query 58475 GCCGCCACGGATACCACCCTGAGAACAGCTCTTCAGATCACCAACGAACTTCTTGATGAA 58534 || || || | || || || || || |||| | ||| | ||| ||| Sbjct 580060 ACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAA 580001 Query 58535 CGGGATCGTACCGGTATGAGTCATCT-CACCGTCGCGGATAGAGGAACCCAGGGCACGGA 58593 |||||| ||||||||| | | || |||| | ||||| | | || || ||||| | Sbjct 580000 CGGGATACAACCGGTATG-GAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAA 579942 Query 58594 TAGCGCCGAAGTCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTGC 58653 || ||| | | |||||| || || || | || |||||||| ||||| || | Sbjct 579941 TACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAG 579882 Query 58654 CAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAACT 58713 ||| || | || ||| | | | || ||| ||| ||| || || ||||||||||| | Sbjct 579881 AAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATT 579822 Query 58714 GACGGGTACGGGTACGCACGCCTGCCATGATAGGTGTTGG 58753 | || || | || || || || |||||||| || || || Sbjct 579821 GGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGG 579782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518743385697600