Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq83 143 3e-29 seq122 123 3e-23 seq1959 93.3 4e-14 >seq83 Length=912621 Score = 143 bits (158), Expect = 3e-29 Identities = 339/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 14783 CACATC---TGGACTGAACAGTGTGATGTACCCAT-TTTTACCGAGACGTTCCATCATCA 14838 |||||| ||||||||| || | ||| | || ||||||| ||||||| ||| | Sbjct 580243 CACATCCGATGGACTGAATAGCGAGATATCGCCGCCTTTTACC-AGACGTTGATACATGA 580185 Query 14839 AATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGT 14898 | |||||||| | ||||||||||| ||||| | ||||| | || ||||| || Sbjct 580184 GTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGT 580125 Query 14899 TGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAG 14958 | || || | || || | | |||||| || | |||||||| || ||| | || || | Sbjct 580124 TATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCG 580065 Query 14959 CTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCC 15018 | ||||| || || || |||||||| || |||||||| || || ||||| || ||||| Sbjct 580064 CGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGT 580005 Query 15019 AGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTC 15078 |||| || || || ||||| |||| ||| || ||| |||| || | Sbjct 580004 AGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCAC 579945 Query 15079 GAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATAATACT 15136 |||| || || ||||| || || || || || ||| ||| | || |||| ||| Sbjct 579944 GAATACGGCCAGCATTGATACCGATCCCTGCGCG-TTG-TGAAACGTATTTAACGATAGC 579887 Query 15137 GTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACT 15196 || | || || ||||| | | ||||||| || |||| || || || || Sbjct 579886 ACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCT 579827 Query 15197 AAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGTCG 15256 || || ||||| || || || |||| ||||| || || ||||| || ||||| | Sbjct 579826 GAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAA 579767 Query 15257 AGTAGATACAGCGTCATAAAAGCGA 15281 || || || || |||||||||||| Sbjct 579766 GGTCGACACGGCATCATAAAAGCGA 579742 >seq122 Length=4874392 Score = 123 bits (136), Expect = 3e-23 Identities = 269/403 (67%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 14850 TGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 14909 |||| ||||| || | |||||| | |||||| | || || || ||||||||| | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 14910 ACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 14969 |||| ||| |||| || || |||||||||||||| || | || || |||||||| || Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 14970 CGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 15029 || || ||||| ||||| || || || || || ||||| || || || |||| ||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 15030 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 15089 ||| || || | |||| || | || ||| || || || |||| Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 15090 GCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCTGCA 15149 ||||| ||||| ||||| || |||| | ||||| | ||| | | | || Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 2805972 Query 15150 TTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTA 15209 ||||| |||| || ||||| ||||| | ||| || || || ||||| || || Sbjct 2805971 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 2805912 Query 15210 GGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCT 15252 || || || | || | |||||| || || |||| ||||||| Sbjct 2805911 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 2805869 Score = 118 bits (130), Expect = 1e-21 Identities = 75/80 (94%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 103765 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 103824 || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 217169 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 217228 Query 103825 ACC-ACTGAGCTAAGGGGCC 103843 ||| ||||||||| |||||| Sbjct 217229 ACCAACTGAGCTATGGGGCC 217248 >seq1959 Length=43063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 103766 TTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAA 103825 ||||||| ||| | ||||| ||||||||| |||| ||||||||||||||| ||||||| Sbjct 8189 TTTGGTGACCCTTACTGGATTTGAACCAGTGACCTGGCGATTATGAGTCGCAAGCTCTAA 8130 Query 103826 CCACTGAGCTAAGGGGCCG 103844 || ||||||||| |||||| Sbjct 8129 CCGCTGAGCTAAAGGGCCG 8111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505749203059320