Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq122 187 3e-42 seq83 129 6e-25 >seq122 Length=4874392 Score = 187 bits (206), Expect = 3e-42 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 60705 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 60764 || |||||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 3215644 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 3215703 Query 60765 CGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 60824 || || ||||| ||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 3215704 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 3215763 Query 60825 GCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCCTC 60880 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| ||||| Sbjct 3215764 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 3215819 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 60698 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60757 ||||| |||| ||| |||||||| | ||| || || |||||||||| |||||| || Sbjct 1181308 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 1181367 Query 60758 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60817 ||| || || || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 1181368 GTTGAAACGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 1181427 Query 60818 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 60877 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 1181428 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 1181487 Query 60878 CTCAAT 60883 ||||| Sbjct 1181488 TTCAAT 1181493 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 139541 TTCAGCTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTT 139600 |||||||| ||||| || ||||||||||| | ||||| |||| ||||| ||| || Sbjct 2806277 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 2806218 Query 139601 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 139660 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 2806217 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 2806158 Query 139661 CCGCCACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 139720 ||||| || | |||||||| || || || || || || ||||| || || || | || Sbjct 2806157 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 2806098 Query 139721 GGAAT 139725 ||||| Sbjct 2806097 GGAAT 2806093 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 69950 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCC 70008 ||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 4690227 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4690168 Query 70009 ATTATACGATATCCGCA 70025 |||||||||| ||||| Sbjct 4690167 ATTATACGATGCCCGCA 4690151 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 69950 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCC 70008 ||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 4697378 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4697319 Query 70009 ATTATACGATATCCGCA 70025 |||||||||| ||||| Sbjct 4697318 ATTATACGATGCCCGCA 4697302 >seq83 Length=912621 Score = 129 bits (142), Expect = 6e-25 Identities = 290/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Minus Query 139547 TGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 139606 || ||||| ||||| | ||||||| |||||| |||| || || ||||||||||| Sbjct 580173 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 580114 Query 139607 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 139666 || | | |||||| |||||| ||||| ||||| ||| | || || || || || Sbjct 580113 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 580054 Query 139667 CGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 139726 || | ||||| || || || ||||| || || ||||| || ||||| | || || ||| Sbjct 580053 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATA 579994 Query 139727 ACACCAGTATGACGCACTTCACCTGTGCCAATCTTAGAACCTTCGGCACGAATCATACCA 139786 ||| ||||| ||||||| | || ||| |||||||| ||| Sbjct 579993 CAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCCA 579934 Query 139787 ACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCCTTA 139846 | || ||||| || || ||||||| || | |||| ||| || | | ||||| Sbjct 579933 GCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGCG 579874 Query 139847 TTGATAGACT-TCAGCGAATCACCTGCCTCAATAACAACACATGAACTAAACTGCCGAGT 139905 |||||||| | | ||| ||| || ||| |||| || ||||| || || || ||||| Sbjct 579873 TTGATAGAGTCTAAGC-TATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 579815 Query 139906 TGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGC 139965 || || || |||||||| || || || || || ||||| | || || || || Sbjct 579814 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 579755 Query 139966 TTCATAAAAACGA 139978 |||||||| ||| Sbjct 579754 ATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534156578942760