Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027360.1 Length=87603 Score E Sequences producing significant alignments: (Bits) Value seq122 95.1 7e-15 >seq122 Length=4874392 Score = 95.1 bits (104), Expect = 7e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 31231 GTTGCTTTGACAGCAAATGCAAAGGTGTCACGAGTCATGTACTGGTAAGTGTAAGAGCCT 31290 || ||||| | || || ||||||||||||| || |||||||||| || ||||| || Sbjct 3983320 GTCGCTTTCATGGCGAAACCAAAGGTGTCACGCGTGTTGTACTGGTACGTATAAGACCCG 3983379 Query 31291 ACACCAAACACTACGTTAGAGCTTGCAAAACCCATTTCATACAGACGCTTCAGGATTTCG 31350 || || ||||| || || ||| ||||| || | | | |||||| ||||||| | Sbjct 3983380 ACGCCGAACACCACATTGCTGCTGGCAAAGCCTTTGGCCTCCAGACGACTCAGGATCTGA 3983439 Query 31351 TTTGCACGTTCCAGCGTGATAGAGTCACCATAGATAAGGCCGATATGCTCATCCATTACC 31410 || ||||| || || || || ||||| || ||||| || || | ||| |||| ||| Sbjct 3983440 TTGGCACGCTCGAGGGTAATCGAGTCGCCGTAGATCAGACCCACGTGCGGGTCCAGCACC 3983499 Query 31411 TT 31412 || Sbjct 3983500 TT 3983501 Score = 91.5 bits (100), Expect = 8e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2345 TTGGCACACCCTACAGGATTCGAACCTGTAACTAACGATTTAGAAGACCGTTGCTCTATC 2404 |||| || ||||||||||||||||||||| || ||| ||||||| ||| ||||||||| Sbjct 814417 TTGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATC 814358 Query 2405 CAATTGAACTAAGGGTGCAT 2424 ||| ||| ||||||| |||| Sbjct 814357 CAACTGAGCTAAGGGCGCAT 814338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 280183411880052