Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq83 107 4e-18 >seq83 Length=912621 Score = 107 bits (118), Expect = 4e-18 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 259911 TTCAAATTCTTTTTGATCAGAGCAGAATGCTTCATATAGCCCAGGGACTTCATTAGGACT 259970 |||||| ||| ||| |||| | |||| || || |||||||| || || || ||||| Sbjct 580288 TTCAAACTCTGCTTGGTCAGCGAAGAAGGCATCGTATAGCCCTGGCACATCCGATGGACT 580229 Query 259971 AAAGAATGTAATATTCTTTCCATCAACCAAACGTTGATACAAAGTTTTGTTTACTTGGAA 260030 || | | |||| || | |||| ||||||||||| |||||| | ||| | Sbjct 580228 GAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATTTGTAC 580169 Query 260031 ACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTACCTTTGTTATTTTTAAGGACTAC 260090 | || || || ||||| ||||||||| ||| ||| ||||||||| ||||||| Sbjct 580168 GCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAA 580109 Query 260091 CAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGAACA--GTTGCTGCACCACCACGA 260148 ||| | |||| |||||| ||||||| ||| | |||| || || ||||| || || Sbjct 580108 TAAGCTTTCAATTTCCAAGTGCCACATAGGGTA--AAACAGTGTCGCGGCACCCCCGCGT 580051 Query 260149 ACACCACCTTGTGAACA 260165 || || ||||| || || Sbjct 580050 ACGCCGCCTTGCGAGCA 580034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113741021027624