Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq4080 484 2e-132 seq302 197 3e-46 seq122 114 3e-21 seq1959 84.2 5e-12 >seq4080 Length=6683 Score = 484 bits (536), Expect = 2e-132 Identities = 671/930 (72%), Gaps = 12/930 (1%) Strand=Plus/Minus Query 30645 CTGCCGTACAAAGACATCAACGAATGCCTGATGAACGGTGTTACCGAGGATGAAAT-CTG 30703 || |||||||||||||||||||| ||||| | | || | || || || | | || Sbjct 6653 CTACCGTACAAAGACATCAACGAGTGCCTAAAGGCTGGAATGACTGACGAGCAGGTACTT 6594 Query 30704 GCAGTACATCGGCACGGCATCCTACTTT-GATCCTGAAGAACTCTACAGCGCGCGAGAGT 30762 | |||| || |||| | | || || || ||||| || |||||||| |||||| Sbjct 6593 GATGTACT--GGAACGGGCTGAGATGTTCGACCCCGAAGAGCTTTACAGCGCCAGAGAGT 6536 Query 30763 TTTACCAGGACACTATCAACGCTTTCTACGGCAAGCAGCAGTATCTGTTTAATCCACCGT 30822 | ||||| ||||| | | ||||||||||| || |||| || || || |||| | Sbjct 6535 TCTACCAAGACACCGTTGATGCTTTCTACGGTCAGGAGCAATACCTATTCCCGACACCTT 6476 Query 30823 GGGAATCTCTGGCAGATAAATTCCAGTTTCGTGAGGCCGAGTTGACGCTGGTCAATGGTG 30882 || | | || | ||| ||| ||| || || || ||| | || |||||||| || | Sbjct 6475 GGTCAACGCTAAACGGTAACTTCATGTTCCGCGAAGCAGAGCTAACACTGGTCAACGGGG 6416 Query 30883 TGAACGGTCACGGAAAAACGGAGGTTGTCGGGCATATGGCACTTGAGGCAATGCGTCAGG 30942 | ||||||||||| |||||||| || || || |||||| | ||||| || ||| || | Sbjct 6415 TAAACGGTCACGGGAAAACGGAAGTGGTAGGCCATATGACCCTTGAAGCGATGAAGCATG 6356 Query 30943 GTGTGAAGACGTGCATCGCGTCACTTGAGCTGAAGCCTGGTATTCTCCTTAAGCGCCTTA 31002 | || || || || |||| ||||||||| | ||||| || | || |||||||||| Sbjct 6355 GCGTTAAAACCTGTGTCGCCTCACTTGAGTTAAAGCCAGGCCAATTGCTCAAGCGCCTTA 6296 Query 31003 CCCGTCAGGCGACGTGCTGCAAGATGCCGCCAGTGCTGGAAATTGACTCTGCATTTAAAT 31062 | |||||||| || ||| || | || || | |||||||| || || |||| | Sbjct 6295 CTCGTCAGGCTACCTGCGTTAAACTCCCACCGAAGAACGAAATTGAATCAGCGTTTAGTT 6236 Query 31063 TTTATGACGAAAGACTTTGGGTGTTTGGCCTGACTGGAACGGCGAAAGCCGACAGGCTGA 31122 |||| || || | | ||| | ||||| || || ||||| || ||||||||| | || Sbjct 6235 TTTACGATGACCGGTTATGGTTATTTGGACTAACGGGAACCGCTAAAGCCGACCGACTTC 6176 Query 31123 TCGAAATATTCGACTACGCTCGCCGCCGATACGGCATCCAGTTATTCATCATCGACAGCC 31182 | || |||||||| ||||| | || |||||| | ||||||||||||| ||||||| Sbjct 6175 TTGAGATATTCGAGTACGCGAGAAAGCGTTACGGCGTGAAGTTATTCATCATTGACAGCC 6116 Query 31183 TGATGAAATGCGGCATAGGTGACGATGACTATAACGGGCAGAAAGCATTTGTTGACTCGA 31242 | |||||||||||||| |||||||||||||| |||| |||||| || |||||||| | Sbjct 6115 TAATGAAATGCGGCATTGGTGACGATGACTACAACGCGCAGAAGGCTTTTGTTGATGCTG 6056 Query 31243 TTTGTGACTTCAAAAACAAAACAAACTCCCACGTCATTCTCGTTACTCACTCCAGAAAAG 31302 | ||||||||||| ||| ||||||| ||| || || ||||| |||||| | |||| Sbjct 6055 TCTGTGACTTCAAGAACCGAACAAACAGCCATGTAATACTCGTAACTCACAGTCGGAAAG 5996 Query 31303 GAGATAGCGAAGAAAAACCAACCGGGAAAATGGACGTAAAAGGCTCTGGAGCGATAACAG 31362 | || |||||||| || || || || || |||||||| ||||||||||| |||| || | Sbjct 5995 GTGACAGCGAAGAGAAGCCTACTGGAAAGATGGACGTGAAAGGCTCTGGTTCGATTACTG 5936 Query 31363 ACCTGACAGACAACCTTTTTATCATCTGGCGTAACAAGGCTCGCGAGAGAGCGTTACAGA 31422 |||| ||||||||||| |||||||||||||| ||||| || || |||| || |||||| Sbjct 5935 ACCTTACAGACAACCTGTTTATCATCTGGCGAAACAAAGCCCGTGAGAAGGCCATACAGA 5876 Query 31423 GAGTTCAGA---GTGGTGAAAAGATGTCAGAGAAGGACGAA-CAGCTACTGGCATCTCCG 31478 || || | | |||| || | || || ||| || |||| ||| |||| Sbjct 5875 -AG--CAAAACCTTAATGAAGCATTGACCGACAAAGACCAATCAGC-ACTCAGCGCTCCT 5820 Query 31479 GCATCTGTTTTGATGCTTGAAAAACAACGTAACGGCGAAGGTTGGGAAGGTGGTGTCCCG 31538 ||||| | | ||||| || ||||| || ||||| ||||| ||||||||||| | ||| Sbjct 5819 GCATCCATGCTCATGCTAGAGAAACAGCGCAACGGGGAAGGGTGGGAAGGTGGCATACCG 5760 Query 31539 TTGTTCCTTGACGAGCAATCGCACCAGTTC 31568 | | ||| || || | ||||||||| ||| Sbjct 5759 CTATACCTAGATGACCCATCGCACCAATTC 5730 >seq302 Length=239003 Score = 197 bits (218), Expect = 3e-46 Identities = 282/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 23291 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCAATGCCGAACAAACCATT 23350 ||| || | | |||| ||||| || ||||| || | |||||||| | |||| | |||| Sbjct 149601 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 149660 Query 23351 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCC 23410 || |||||||| | |||||| || || || || || ||||| || || || |||||||| Sbjct 149661 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 149720 Query 23411 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 23468 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 149721 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 149778 Query 23469 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 23528 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 149779 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 149838 Query 23529 ATTGATAAAAACAGGCCATTCAGTAGCGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTT 23588 || | || || || || || || || ||||| || || | ||| ||||| ||| | Sbjct 149839 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 149898 Query 23589 CTGTATTTATATTTACCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTTCTGA 23648 | |||||||| |||||||| ||||||||| |||||||| ||||| || | |||| Sbjct 149899 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 149958 Query 23649 ATAGCAGCCAGTCTTGCGTAAAATTCTTTGCTCAT 23683 || | || || |||||||||||||||| ||||| Sbjct 149959 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 149993 >seq122 Length=4874392 Score = 114 bits (126), Expect = 3e-21 Identities = 331/496 (67%), Gaps = 20/496 (4%) Strand=Plus/Minus Query 19072 TCAAATAAGCTGCTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGG 19131 || || |||||||| ||||||||||| |||||||||| || || | ||||| ||| || Sbjct 2987245 TCTAACAAGCTGCTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGG 2987186 Query 19132 CTGGCAACAAAGACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCA 19190 || |||| | || || || ||| | || | ||||||| ||| | || Sbjct 2987185 CTCTCAACCCCTGCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCA 2987127 Query 19191 TAGCAAGATGGGCAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTCCTCGA 19250 | |||||||| |||||||||||||| || || || || || || ||||| | | || Sbjct 2987126 TTCGAAGATGGGGAATGTTATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGA 2987067 Query 19251 TAAAGCCA-TGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGA 19309 || || | | | | | | | || | ||||| ||| | || | ||||| ||| Sbjct 2987066 -AAGGCTACTTGCGATGAAAACCCCGGTAATGTTCCCCGGACAGGAACTGGACAAAGCGA 2987008 Query 19310 TCAGCATCGCTGCAGC-CAACCGATTCGTAAATAGAATAA---GGGGAGG--GATGGATA 19363 || | || | | | ||| || ||| || ||| || | | | | ||| |||| Sbjct 2987007 TCGAC--CGATCCTCCGCAA---ATCTGTACAT-GAAAAACCTGCGCACGAAGATAGATA 2986954 Query 19364 TAGGTTACTGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGAGATGA 19423 | | ||||| || ||||||||||| | | || ||||| | || || || Sbjct 2986953 TCCCCGAATGGCGCACTCATGATTTCAGGCGCTCACTGGTTACCAACTTATC--AGGCGA 2986896 Query 19424 ATGT--CGAGCCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTC 19481 | || | ||| || || || || ||||| || ||||| || |||||| ||||| | Sbjct 2986895 AGGTATCATGCCCCACGTCACCGAAAAGATGCTGGGGCATGAGCTGGGCGGGGTAATGGC 2986836 Query 19482 CGTATACAATAAACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGA 19541 || || || ||||| |||||| | |||| ||||||||||| ||||||||| ||||||| Sbjct 2986835 GGTTTATAACAAACATGACTGGCTTGAGGAGCAGCGCAAAGCCTATGAGCTTTACGCTGA 2986776 Query 19542 TAAATTGTTCTGGCAC 19557 |||| | | |||||| Sbjct 2986775 TAAAGTCCTGTGGCAC 2986760 >seq1959 Length=43063 Score = 84.2 bits (92), Expect = 5e-12 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 36871 TCCACAATCGCTGACATGCAGAAGCGTCAACGTGATGTAGCAGAACTTGACGCCAGATAC 36930 || |||||| | |||||||||| || || || ||||| || | ||| ||||| | ||| Sbjct 9625 TCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTAC 9684 Query 36931 ACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAAGCCTCCGTGCTGATGTTTCTGCT 36990 ||||||||| | ||||||||||| || | || ||| ||||| || |||| || | Sbjct 9685 ACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGAT 9744 Query 36991 GGGCGTAAGCG 37001 || || ||||| Sbjct 9745 GGCCGCAAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123843588680224