Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq83 109 1e-18 seq122 91.5 3e-13 >seq83 Length=912621 Score = 109 bits (120), Expect = 1e-18 Identities = 225/335 (67%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 128734 CCAATGTGGCATTTGGAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAA 128793 || |||||||| |||||| |||||| | |||| ||||||||||| || |||| Sbjct 580079 CCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAA 580138 Query 128794 TTTAACCGAGTAAGACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGA 128853 |||||| || | || || || || || | |||||||| || | |||||||| Sbjct 580139 GGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAACGT 580198 Query 128854 TTGATTGATGGAAAAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGAT 128913 || | | || || || | | || || ||| ||||| || | ||||| ||| Sbjct 580199 CTGGTAAAAGGCGGCGATATCTCGCTATTCAGTCCATCGGATGTGCCAGGGCTATACGAT 580258 Query 128914 GCATTTTGTGCTGATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGATGAA 128973 || || | ||||| |||| ||| ||||||||||| || | | |||| ||| ||||| Sbjct 580259 GCCTTCTTCGCTGACCAAGCAGAGTTTGAACGTCTTTACACTCAGTACGAAGCGGATGAT 580318 Query 128974 ACTATTCGTAGGAAAACTATGCCAGCGATTGAAGCATTTAGTCATCTAATACAAGAGCGT 129033 ||||||||| | ||| || ||| |||| ||| | | || ||||| ||| Sbjct 580319 TCTATTCGTAAGCAAAAAATTAAAGCCGTTGATCTGTTTGCCCTAATGATGCAAGAACGT 580378 Query 129034 GCAGAAACTGGCCGCATTTATATTCAGAATATTGA 129068 || |||||||| |||||||| || || |||| Sbjct 580379 GCTTCGACTGGCCGTATTTATATCCAAAACGTTGA 580413 >seq122 Length=4874392 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 179335 GGAAGGATGGCCGAGTGGTTTAAGGCACTGGTCTTGAAAACCAGCAATCCGAAAGGGTTC 179394 ||||| ||||||||||| | ||||||| ||||||||||||| || | |||| |||| Sbjct 1254778 GGAAGCGTGGCCGAGTGGCTGAAGGCACCGGTCTTGAAAACCGGCGACGGGAAACCGTTC 1254837 Query 179395 TAGAGTTCAAATCTCTATCCTTCCACCA 179422 |||||||| |||||||| ||||||||| Sbjct 1254838 TAGAGTTCGAATCTCTACGCTTCCACCA 1254865 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 179335 GGAAGGATGGCCGAGTGGTTTAAGGCACTGGTCTTGAAAACCAGCAATCCGAAAGGGTTC 179394 ||||| ||||||||||| | ||||||| ||||||||||||| || | |||| |||| Sbjct 1255110 GGAAGCGTGGCCGAGTGGCTGAAGGCACCGGTCTTGAAAACCGGCGACGGGAAACCGTTC 1255169 Query 179395 TAGAGTTCAAATCTCTATCCTTCCACCA 179422 |||||||| |||||||| ||||||||| Sbjct 1255170 TAGAGTTCGAATCTCTACGCTTCCACCA 1255197 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 178964 CCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCC 179023 ||||||| ||||||||||||| || | ||||||||||| ||||||||| ||||||| ||| Sbjct 814343 CCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCC 814402 Query 179024 AGTAGGG 179030 |||||| Sbjct 814403 TGTAGGG 814409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108906209026737