Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq122 147 3e-30 >seq122 Length=4874392 Score = 147 bits (162), Expect = 3e-30 Identities = 199/275 (72%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAG-TGCGGATTTTTTCCTCGGCGTGCCGTTCAACAT 198387 || || || || || ||||| ||| |||| || | ||||||||| |||||||||| || Sbjct 3442368 CTCTCCTGCCAACTGTATCAGCGCTCCTGCG-ATATCTTCCTCGGCCTGCCGTTCAATAT 3442310 Query 198388 CGCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGA 198447 ||| ||||| || || ||||| ||| | ||||||||| || ||| ||| || Sbjct 3442309 CGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGA 3442250 Query 198448 TTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCT 198507 ||| | ||||| || || || || ||||| ||| || || ||||||||| | || Sbjct 3442249 TTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCT 3442190 Query 198508 CCAGCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATC 198567 ||||||||||| || ||| | | ||||| ||||| |||||||| || ||||| || Sbjct 3442189 GCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTC 3442130 Query 198568 TATCTTCGATTATAAATTCGAAGATTTTGAGATCG 198602 ||||||||| ||| || || || || ||||||| Sbjct 3442129 TATCTTCGACTATCGCTTTGATGACTTCGAGATCG 3442095 Score = 120 bits (132), Expect = 5e-22 Identities = 202/287 (70%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTT-AAAGGCGAT 197671 ||||||| ||||| | | | |||||| || | || || |||| || | ||| || Sbjct 3442841 TGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCAGGG-CACGCCCAAAAATGAC 3442783 Query 197672 CGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAA 197731 || || ||||| || ||||| || | ||||| | ||||||||||| || ||| | Sbjct 3442782 CGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGAC 3442723 Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 ||||| ||| | ||||| || ||||| ||| |||| ||||| || ||||| |||||| Sbjct 3442722 GGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTGCTG 3442663 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCT---GGAAGATAACGGCGTTACCATT 197848 |||||||||| || || ||||||| | || || |||| |||| || || | || Sbjct 3442662 TGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAA-GGTGT--CGATC 3442606 Query 197849 TGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 ||| |||||| |||||||| || |||| || || | ||||| Sbjct 3442605 TGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGG 3442559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769133381756040