Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq240 192 5e-44 seq4 161 8e-35 seq93 113 4e-20 >seq240 Length=440480 Score = 192 bits (212), Expect = 5e-44 Identities = 395/581 (68%), Gaps = 16/581 (3%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| || ||||| || ||||| | ||||| |||| ||| ||||| Sbjct 152790 ATTGGTGGTTTGGATACGGAGTTCAATGCTATCTTCAGGAGAGCCTTTGCGTCCCGTGTG 152849 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGA---CTTTTGCTT 19359 ||| | | || || || |||| | || ||||| ||||| || |||||| Sbjct 152850 TTTCCCCCTGAAGTTGTTGAACAGCTTGGCTGTAAGCATGTAAAAGGCATCCTTTTG--- 152906 Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA 19419 ||||| || || || ||| ||||| | || || | || || | ||| | || || Sbjct 152907 TATGGACCTCCCGGAACTGGTAAAACTCTGATGGCTCGTCAAATTGGAAAAATGCT--CA 152964 Query 19420 AAACAACCT--CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAAT 19477 | ||| |||||||| || |||||||| |||| | | |||||||| || | | Sbjct 152965 ATGCAAGGGAACCCAAAATCGTGAATGGTCCCCAAATTCTTGACAAATATGTGGGAGAGT 153024 Query 19478 CGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGC 19537 | || | ||||| || || |||||||| || || ||||||||| ||||||| || || | Sbjct 153025 CTGAGGCTAATGTTCGTCGCTTGTTTGCGGATGCCGAAGAAGAAGAAAAACGATTGGGTC 153084 Query 19538 GCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG---CAAA 19594 || ||| | || ||||| || | |||||| | || ||||||||||| | | Sbjct 153085 CAAACAGTGGCCTACATATTATCATCTTTGATGAAATCGATGCAATCTGTAAAGCTCGAG 153144 Query 19595 GA--GGTT-CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651 || |||| ||||| | || || |||||||||||||||||||||||| || | ||| Sbjct 153145 GATCGGTTGCTGGTAACACAGGTGTTCATGACACTGTTGTCAATCAACTCTTGGCTAAAA 153204 Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711 | || ||||| | ||| |||| || ||| | || ||||||||||||||| ||| ||| Sbjct 153205 TTGATGGTGTGGAGCAATTGAACAACATTCTTGTGATTGGCATGACTAATCGACGGGACA 153264 Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTAC 19771 | || || || | ||||| || ||||| | || | | || || ||| | ||| Sbjct 153265 TGATTGATGAGGCTCTTTTACGGCCTGGTCGTCTTGAGGTTCAAATGGAGATTGGCCTAC 153324 Query 19772 CCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812 | ||||| |||||| | ||||| || || |||||| Sbjct 153325 CAAATGAAAATGGACGCAACCAGATTTTGAATATTCATACA 153365 >seq4 Length=4567600 Score = 161 bits (178), Expect = 8e-35 Identities = 249/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||| | |||||||| ||||||||||||| ||| |||||||| || |||||| Sbjct 988813 AGGTGATTTGGGTCCTGTATATGGATTTCAGTGGCGCCATTTTGGTGCTGAATATGTAGA 988872 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC-GTTATAGATACGA 40983 ||||| |||| || | ||| ||||| || || || | |||| || || || | Sbjct 988873 TATGTTTACTGACTACAGCAACAAAGGTATTGACCAGCTG-AGTGATGTGATCAGTAAAA 988931 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 | ||| || ||| | || | || | |||| || ||||| || ||||| | Sbjct 988932 TAAAAAATAGACCTGATGACAGAAGAATTCTCATGTGTGCATGGAATCCTGTTGACGTCC 988991 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAA 41102 ||||| || || ||||| |||| | ||| || ||||| || ||||||||| Sbjct 988992 CAAAAATGGCTTTACCGCCTTGCCATTGCCT-TGTGCAATTTTATGTGGCAAATGGTGAA 989050 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 ||||| |||||| | |||||||| |||| || |||||||| || ||||| |||||||| Sbjct 989051 CTGTCTTGTCAACTCTATCAAAGGTCAGCAGATATGGGACTGGGTGTCCCATTTAACATT 989110 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 || || |||||||| || || |||||||| || || || || ||||| || Sbjct 989111 GCCAGCTATGCTCTCCTTACTTATATGATAGCTCATGTAACAAATTTGAA 989160 >seq93 Length=974399 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || ||||||||||| || || | || || |||||||| || ||||| |||||| Sbjct 915140 GAGAAACATTTTATCTCCCATGTCCTTGCCTTCTTTGCTGCTTCTGATGGGATTGTCAAT 915081 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 ||||| || || | || ||||||||||| || |||||||||| || || ||| Sbjct 915080 GAAAACTTAGTGGAAAGATTCAGTCAAGAAGTTCAGGTAACAGAAGCACGGTGCTTCTAT 915021 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || ||||| ||||| || |||||| |||| || |||||||||||| | | || || || Sbjct 915020 GGCTTTCAGATTGCAATGGAAAATGTTCACTCAGAAATGTACAGTTTGTTAATCGACACA 914961 Query 44009 TACAT 44013 ||||| Sbjct 914960 TACAT 914956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425662059315