Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq43 116 3e-21 seq275 104 2e-17 >seq43 Length=2082672 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||| ||||| || | |||||| || || || || || ||||||||||| | Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| ||||| || || || | || | |||||| ||||| || || Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||| ||| || | | | || | || || | || ||||||| Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACT 901121 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| || || || || |||||||| ||||| Sbjct 901120 TCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || |||||||||||||| || | || | ||||| ||||| |||||| Sbjct 901042 GTGGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCAAGCTGCTTACCG 900983 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| || || || || | ||||||||||| |||||| || Sbjct 900982 GCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTAGCCTTG 900923 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | | || | || ||||| || ||||| || | ||||| ||||| || Sbjct 900922 ACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTC 900863 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| ||||| |||||| Sbjct 900862 TTCACGAAGATCTGCATA 900845 >seq275 Length=398669 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||||||||| |||||||| || ||||| | || || ||||| || || || ||| Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | |||||||| || || || || | || || || || || ||| ||| | | | | Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | || ||||| || |||||| |||| || |||| ||| || || || |||||||||| Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 27238 AGATTTGCAT 27247 |||| ||||| Sbjct 170545 AGATCTGCAT 170536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424901964624456