Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq122 769 0.0 seq4080 379 8e-101 seq1959 107 7e-19 seq620 84.2 8e-12 >seq122 Length=4874392 Score = 769 bits (852), Expect = 0.0 Identities = 973/1335 (73%), Gaps = 3/1335 (0%) Strand=Plus/Minus Query 165 TTTGTTCACTTGCTAATGCGTACATATTGAGTACAGAATACATTATAAACTTGTGTACAG 224 || |||||||||| | |||||||| ||||||||||||||| ||| | |||||||||| Sbjct 2987981 TTCGTTCACTTGCCATTGCGTACACATTGAGTACAGAATAGATTTCAGTGTTGTGTACAG 2987922 Query 225 GATA-TAAAGCATTGGCACTGAGTGACACCAAACTACGAGGCCTATACGGAAAACCCTAC 283 |||| |||| | |||| || || || || || || || || || |||||||| | ||| Sbjct 2987921 GATACTAAA--AGTGGCTCTCAGCGATACAAAGCTTCGCAGCATAAACGGAAAATCATAC 2987864 Query 284 TCTGGCCCTGCTGAAATCACCGATGGTGACGGGTTAAGTGTGCGGATTACTCCAGCAGGA 343 |||||||| ||||| | |||||||| |||||||||||||| || || || ||| | || Sbjct 2987863 TCTGGCCCACCTGAAGTGACCGATGGGGACGGGTTAAGTGTCCGCATAACGCCAACTGGG 2987804 Query 344 ACTATCACGTTTCAGTACCGTTATCGCTGGAATGGTAAGCCAGTACGTCTTACTGTCGGG 403 || || || || ||||| || || ||||||||||| | || || || | || || || Sbjct 2987803 ACCATAACCTTCCAGTATCGATACCGCTGGAATGGAAGCCCCGTTCGCATAACCGTTGGC 2987744 Query 404 CGCTATCCGTCCACTTCACTGAAGGACGCACGTGTTATCGTCGGTGAGATGCGCGCATTG 463 ||||| || || ||||| || ||||| || || | ||| || ||||||||||||||| Sbjct 2987743 CGCTACCCCTCTACTTCGCTAAAGGATGCCCGGATCGCCGTTGGCGAGATGCGCGCATTG 2987684 Query 464 TACATGAAGGGAGTTAACCCTAAAAATTATTTTGCCCCCAGTGATGGCGAATTGACATTA 523 |||| |||||| || ||||| |||| ||||||||| ||| || |||||||| | Sbjct 2987683 TACACGAAGGGGGTAAACCCAAAAACCTATTTTGCCAGCAGCTCGGGTGAATTGACTCTT 2987624 Query 524 AAAGAATGCCTGGATCAGTGGTGGGATAAGTATGTTAGCGGCCTGAAACCCAATACTCAG 583 | ||||||| || ||||||||||| |||||||| | ||| |||||| ||||| | Sbjct 2987623 CAGCAATGCCTCGACCAGTGGTGGGAAAAGTATGTGACCGGGCTGAAAGAGAATACCCGC 2987564 Query 584 ACGCTTTATAGATCTGTTGTGTACAACACTATGTACACACAGTTTGAAGACTCGCCAGTT 643 | || || | || || ||||||||||| ||||||||||| || || || || Sbjct 2987563 ATCCTGTACAAGTCAGTCGTGTACAACACCATGTACACACAATTCCGCGATGTCCCGGTC 2987504 Query 644 GCCGGTATCCCTGTATCGGCTTGGGCTCGCTTTTTTGACAAGCAAGAAAGCCTCAACAAG 703 || | | || ||||| |||| | || || || ||||| || |||| || ||| Sbjct 2987503 GCTAGCGTACCAGTATCCCTGTGGGTCCAGTTCTTCGATAAGCAGGAGAGCCAGAATAAG 2987444 Query 704 AAAAAGGCTCGTGTTCTGTTGTTACAACTGCGTTCAGTTATTAACTGGTGTATCAGCCGC 763 || || || | || || || | || |||||||| || || |||||||| |||||||| Sbjct 2987443 AAGAAAGCGAGAGTGCTTCTGCTGCAGCTGCGTTCTGTAATGAACTGGTGCATCAGCCGG 2987384 Query 764 CAGTTAATCCCATCATGCGAATTACTCAAACTTAGTGTAAAGAATATTGGGAAGAAACCA 823 ||| | || |||||||| ||| | ||||||| || || || |||||||| ||||| ||| Sbjct 2987383 CAGCTCATTCCATCATGTGAAGTCATCAAACTCAGCGTTAAAAATATTGGCAAGAAGCCA 2987324 Query 824 GATGTGGGGAGTCGCGTACTTACCTATACGGAACTGGCAAAGATCTGGCTGACACTGGAG 883 ||||| || ||||| | || || || || ||||| || | |||||| | ||||| Sbjct 2987323 GATGTTGGCGTGCGCGTGTTGACTTACACAGAGCTGGCGAAAGTGTGGCTGGCGCTGGAA 2987264 Query 884 AACTCAAAAGTGGTTACTTCCAACAAGCTGTTACATCAATTGCTATTGCTATGGGGGGCC 943 || || ||| || | || ||||||||| | ||||| |||| |||| ||||| ||| Sbjct 2987263 AATAACAAGGTGTTTTCATCTAACAAGCTGCTGCATCAGATGCTGCTGCTGTGGGGAGCC 2987204 Query 944 AGGCTTTCTGAGCTACGTCTCGCTACAGCCAGTGAGTTCAACATGGAAGATCTGGTCTGG 1003 || | || || || || ||| | || | ||||||||||| ||||| | | ||| Sbjct 2987203 AGATTGTCAGAACTTCGGCTCTCAACCCCTGCTGAGTTCAACACTGAAGACTTCATATGG 2987144 Query 1004 ACAACCCCTAAAGAGCATTCAAAGATGGGTAATATTATCCGGCGTCCGATATTTACTCAG 1063 || || ||| | ||||| |||||||| ||| ||||||| || || |||||| ||| Sbjct 2987143 ACTACACCTGTCGCCCATTCGAAGATGGGGAATGTTATCCGCCGCCCTATATTTGAGCAG 2987084 Query 1064 GTTGAGCCTTATATTGAGCGATTGCTTAATATCGGATTTGATGTGCTGTTCCCTGGGCAG 1123 | |||| ||| |||| | | ||| || | || ||||||| || ||| Sbjct 2987083 ATGAAGCCATATGTTGAAAGGCTACTTGCGATGAAAACCCCGGTAATGTTCCCCGGACAG 2987024 Query 1124 GAAATAGATAAACCTATTGACCGTTCGTCTGCTAATTTGTACATGAAAAAACTCAGGGCG 1183 ||| | || ||| | || ||||| || || || ||| ||||||||||||| || | || Sbjct 2987023 GAACTGGACAAAGCGATCGACCGATCCTCCGCAAATCTGTACATGAAAAACCTGCGCACG 2986964 Query 1184 AAAATTGATATTCCTGAATGGAGAACGCATGATTTTAGGCGTTCTCTGGTAACGAATTTA 1243 || || ||||| || |||||| | || |||||||| ||||| || ||||| || || ||| Sbjct 2986963 AAGATAGATATCCCCGAATGGCGCACTCATGATTTCAGGCGCTCACTGGTTACCAACTTA 2986904 Query 1244 TCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTGGGAGGA 1303 || || ||||| || |||||||||||||| ||||| |||||||||||||| ||||| || Sbjct 2986903 TCAGGCGAAGGTATCATGCCCCACGTCACCGAAAAGATGCTGGGGCATGAGCTGGGCGGG 2986844 Query 1304 GTGATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGAGTTG 1363 || ||||| || ||||| ||||| |||||| | ||| ||| | || |||||| | Sbjct 2986843 GTAATGGCGGTTTATAACAAACATGACTGGCTTGAGGAGCAGCGCAAAGCCTATGAGCTT 2986784 Query 1364 TATGCTGATAAAATTTTCTGGCACGCTAAACAGCTCGGTTAATTCCTCCGGATTTAAGCC 1423 || ||||||||| | | ||||||| |||||||||||||| | || || | | || Sbjct 2986783 TACGCTGATAAAGTCCTGTGGCACGTTAAACAGCTCGGTTGACACCGCCATCATCTACCC 2986724 Query 1424 ATTGTTCAACGGCCTGACGGCTATATCGCGCCGGATGAGTAAGTACTGGATCAGGGAATC 1483 | | || ||| ||| ||||| |||||||| || |||||||| || || ||||||| | Sbjct 2986723 ACTTTTTAACAGCCCTGCGGCTGTATCGCGCAGGGTGAGTAAGAACAGGGGCAGGGAAGC 2986664 Query 1484 CGTGtttttttCGCA 1498 |||| || ||||||| Sbjct 2986663 CGTGGTTCTTTCGCA 2986649 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 21663 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 21719 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 217266 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 217207 Query 21720 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 21757 | |||||||||||||| |||||| ||||||||| || Sbjct 217206 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 217169 >seq4080 Length=6683 Score = 379 bits (420), Expect = 8e-101 Identities = 493/676 (73%), Gaps = 8/676 (1%) Strand=Plus/Minus Query 15571 AACACCGAGGTTGTCGGGCATATGGCACTTGAGGCAATGCGTCAGGGTGTGAAGACGTGC 15630 || || || || || || |||||| | ||||| || ||| || || || || || || Sbjct 6401 AAAACGGAAGTGGTAGGCCATATGACCCTTGAAGCGATGAAGCATGGCGTTAAAACCTGT 6342 Query 15631 ATCGCGTCACTTGAGCTGAAGCCTGGTATTCTCCTTAAGCGCCTTACCCGTCAGGCGACG 15690 |||| ||||||||| | ||||| || | || ||||||||||| |||||||| || Sbjct 6341 GTCGCCTCACTTGAGTTAAAGCCAGGCCAATTGCTCAAGCGCCTTACTCGTCAGGCTACC 6282 Query 15691 TGCTGCAAGATGCCGCCAGTGCTGGAAATTGACTCTGCATTTAAATTTTATGACGAAAGA 15750 ||| || | || || | |||||||| || || |||| ||||| || || | Sbjct 6281 TGCGTTAAACTCCCACCGAAGAACGAAATTGAATCAGCGTTTAGTTTTTACGATGACCGG 6222 Query 15751 CTTTGGGTGTTTGGCCTGACCGGAACGGCGAAAGCCGACAGGCTGATCGAAATATTCGAC 15810 | ||| | ||||| || || ||||| || ||||||||| | || | || |||||||| Sbjct 6221 TTATGGTTATTTGGACTAACGGGAACCGCTAAAGCCGACCGACTTCTTGAGATATTCGAG 6162 Query 15811 TACGCTCGCCGCCGATACGGTATCCAGTTATTCATCATCGACAGCCTGATGAAATGTGGC 15870 ||||| | || ||||| | ||||||||||||| |||||||| |||||||| ||| Sbjct 6161 TACGCGAGAAAGCGTTACGGCGTGAAGTTATTCATCATTGACAGCCTAATGAAATGCGGC 6102 Query 15871 ATAGGCGACGATGACTATAACGGGCAGAAGGCGTTTGTTGACTCGATTTGCGACTTCAAA 15930 || || ||||||||||| |||| ||||||||| |||||||| | | || |||||||| Sbjct 6101 ATTGGTGACGATGACTACAACGCGCAGAAGGCTTTTGTTGATGCTGTCTGTGACTTCAAG 6042 Query 15931 AACAAAACAAACTCCCACGTCATTCTCGTTACTCACTCGCGAAAAGGAGACAGCGAAGAA 15990 ||| ||||||| ||| || || ||||| |||||| || ||||| ||||||||||| Sbjct 6041 AACCGAACAAACAGCCATGTAATACTCGTAACTCACAGTCGGAAAGGTGACAGCGAAGAG 5982 Query 15991 AAACCAACCGGGAAAATGGACGTAAAAGGCTCTGGAGCGATAACAGACCTGACAGACAAC 16050 || || || || || |||||||| ||||||||||| |||| || ||||| ||||||||| Sbjct 5981 AAGCCTACTGGAAAGATGGACGTGAAAGGCTCTGGTTCGATTACTGACCTTACAGACAAC 5922 Query 16051 CTTTTCATCATCTGGCGTAACAAGGCTCGCGAGAGAGCGTTACAGAGAGTTCAGA---GT 16107 || || ||||||||||| ||||| || || |||| || |||||| || || | | Sbjct 5921 CTGTTTATCATCTGGCGAAACAAAGCCCGTGAGAAGGCCATACAGA-AG--CAAAACCTT 5865 Query 16108 GGTGAAAAGATGTCAGAGAAGGACGAA-CAGCTACTGGCATCTCCGGCATCTGTTTTGAT 16166 |||| || | || || ||| || |||| ||| |||| ||||| | | || Sbjct 5864 AATGAAGCATTGACCGACAAAGACCAATCAGC-ACTCAGCGCTCCTGCATCCATGCTCAT 5806 Query 16167 GCTTGAAAAACAACGTAACGGCGAAGGTTGGGAAGGTGGTGTCCCGTTGTTCCTTGACGA 16226 ||| || ||||| || ||||| ||||| ||||||||||| | ||| | | ||| || || Sbjct 5805 GCTAGAGAAACAGCGCAACGGGGAAGGGTGGGAAGGTGGCATACCGCTATACCTAGATGA 5746 Query 16227 GCAATCGCACCAGTTC 16242 | ||||||||| ||| Sbjct 5745 CCCATCGCACCAATTC 5730 Score = 100 bits (110), Expect = 1e-16 Identities = 178/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 14293 CTGCCGTACAAAGACATCAACGAATGCCTGATGAACGGTGTTACCGAGGATGAAAT-CTG 14351 || |||||||||||||||||||| ||||| | | || | || || || | | || Sbjct 6653 CTACCGTACAAAGACATCAACGAGTGCCTAAAGGCTGGAATGACTGACGAGCAGGTACTT 6594 Query 14352 GCAGTACATCGGCACGGCATCCTAT-TTCGATCCTGAAGAACTCTACAGTGCGCGAGAGT 14410 | |||| || |||| | || ||||| || ||||| || ||||| || |||||| Sbjct 6593 GATGTACT--GGAACGGGCTGAGATGTTCGACCCCGAAGAGCTTTACAGCGCCAGAGAGT 6536 Query 14411 TTTACCAGGACACTATCAACGCTTTCTACGGCAAGAAGCAGTATCTGTTTAATCCACCGT 14470 | ||||| ||||| | | ||||||||||| || |||| || || || |||| | Sbjct 6535 TCTACCAAGACACCGTTGATGCTTTCTACGGTCAGGAGCAATACCTATTCCCGACACCTT 6476 Query 14471 GGGAATCTCTGGCAGATAAATTCCAGTTCCGTGAGGCCGAGTTGACGCTGGTCAATGGTG 14530 || | | || | ||| ||| |||||| || || ||| | || |||||||| || | Sbjct 6475 GGTCAACGCTAAACGGTAACTTCATGTTCCGCGAAGCAGAGCTAACACTGGTCAACGGGG 6416 Query 14531 TGAACGGTCACGGAAA 14546 | ||||||||||| || Sbjct 6415 TAAACGGTCACGGGAA 6400 >seq1959 Length=43063 Score = 107 bits (118), Expect = 7e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21678 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 21737 |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 8111 CGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCAAA 8170 Query 21738 TCCAGCAAGGGCCACCA 21754 ||||| ||||| ||||| Sbjct 8171 TCCAGTAAGGGTCACCA 8187 Score = 87.8 bits (96), Expect = 7e-13 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 27849 ACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCG 27908 || || || ||||||||| |||||||| ||||||||||| ||||| ||||| ||| | Sbjct 9628 ACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACA 9687 Query 27909 AGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 27968 | ||||||||| ||||| | ||| || || |||| || || ||||| | ||| Sbjct 9688 AAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGC 9747 Query 27969 CGTAAGCGCCTGCGGATC 27986 || ||||| |||| ||| Sbjct 9748 CGCAAGCGGTTGCGCATC 9765 >seq620 Length=44282 Score = 84.2 bits (92), Expect = 8e-12 Identities = 108/149 (72%), Gaps = 10/149 (7%) Strand=Plus/Plus Query 12548 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 12607 ||||||||| | | |||| ||||||||||| | || || || ||||| || | ||| Sbjct 6818 ATGAGCATGGAATTAATGGTCAAGGCCATGAAAACCAAAGTGGGAAACCCGCTTCGGAAA 6877 Query 12608 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTG-----GCCTT 12662 ||||||| | || || || ||||| |||| ||| || ||||||||||| ||||| Sbjct 6878 TTGGTTCTCCTGAAGCTGGCAGATAATGCCAGTGACAAAGGCGAATGCTGGCCGAGCCTT 6937 Query 12663 CATATCAACATGTCGCTGACCAGTGTGAG 12691 | || || |||| || ||||||||| Sbjct 6938 CGTAACA-----TCGCCGATCAGTGTGAG 6961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184431082263834