Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq122 244 1e-59 >seq122 Length=4874392 Score = 244 bits (270), Expect = 1e-59 Identities = 213/265 (80%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 ||||| |||||||||| ||||||||||||||||||||||| ||||| | || ||||| | Sbjct 4007082 GCACGTTACAGCTGATCAAAGAACACGGCTGTAAAGCGGGCCTGGTGCTGAATCCGGCCA 4007023 Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196 |||||||||| ||| ||||| || ||||| || || |||||||||||||||||||| | Sbjct 4007022 CGCCGCTCAGCATTCTGGATTATGTGATGGATAAGCTTGATGTGATCCTGCTGATGTCGG 4006963 Query 58197 TGAACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAG 58256 | ||||| || || ||||||||||| |||||||| |||||| | |||||||| | | Sbjct 4006962 TTAACCCCGGGTTTGGCGGCCAGTCGTTTATTCCCGGCACGCTGAACAAACTGCGTCAGG 4006903 Query 58257 TGCGTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGA 58316 ||||| | || || | ||| ||||||||||| |||||||||||||||||||| | Sbjct 4006902 TGCGTAAACTTATCGACCAGAGCGGCTACGACATTCGTCTGGAAGTGGACGGCGGCGTCA 4006843 Query 58317 AGGTGAACAATATCGGCGAGATCGC 58341 | || |||| || |||| |||||| Sbjct 4006842 AAGTCGACAACATTGGCGCGATCGC 4006818 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 119270 AAGGTACTGGATGAGCACATTGGCCTTATCTATGGTGACTCTATCACGCTGGAACGTGCA 119329 ||||| ||||| |||| | || || ||||| || ||||| || || || || ||||| Sbjct 3983501 AAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCC 3983442 Query 119330 AACGAAATCCTGAAGCGTCTGTATGAAATGGGTTTTGCAAGCTCTAACGTAGTGTTTGGT 119389 || | ||||||| |||||| | | | || ||||| ||| || || ||||| || Sbjct 3983441 AATCAGATCCTGAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTTCGGC 3983382 Query 119390 GTAGGTTCTTACACTTACCAGTACATGACTCGTGACACCTTTGCATTTGCTGTAAAAGCA 119449 || || ||||| || |||||||||| || ||||||||||||| || || | ||||| Sbjct 3983381 GTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCG 3983322 Query 119450 AC 119451 || Sbjct 3983321 AC 3983320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 59615 ATGCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTCG 59674 |||| ||||||| ||| |||||||||||| ||| ||||||| ||| || ||||||||| Sbjct 814338 ATGCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCG 814397 Query 59675 AATCCTGTAGGGTGTACCAA 59694 |||||||||||| ||||||| Sbjct 814398 AATCCTGTAGGGCGTACCAA 814417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471204707673240