Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq93 118 1e-21 seq212 96.9 4e-15 >seq93 Length=974399 Score = 118 bits (130), Expect = 1e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||||||||| ||||| | ||||| |||| ||||||||||| || || | ||||| Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 | | ||| |||| || ||| || || ||||||||||||||||||||| ||||| Sbjct 914687 TAAGCCAGAAAATGGCAGCA-AAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAG 914745 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| | || || || || | | ||||| | ||| ||| ||||| ||||| | Sbjct 914746 GCAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCG 914805 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 |||||||||| | |||||| | |||| ||||| | |||||| Sbjct 914806 GCCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAA 914849 >seq212 Length=676889 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || ||||||||| || ||||||| |||||||| |||||| ||| |||||| ||||| Sbjct 82501 AGAGTCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAAT 82560 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTC 181921 ||||| ||| |||| | | || || || || || || || || || ||||| Sbjct 82561 ATTGTTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGTTCCCATGAGTGAGACTTC 82620 Query 181922 ACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTC 181981 ||| |||||||||||||| | || || || | | || ||||| ||||| || | ||| Sbjct 82621 ACCATGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTC 82680 Query 181982 ATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCAC 182017 | ||| ||| | | || |||| ||| || || Sbjct 82681 TTTCTTGTCATTCCTTTTTAAACAAGTATAAATTAC 82716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627982832944800