Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq93 111 2e-19 seq212 98.7 1e-15 >seq93 Length=974399 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || || || || | ||||| |||| ||||||||||| || || | ||||| Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 | | ||||||||| ||| ||| |||||||||||||| ||||||||| || || | Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 130155 CAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGCG 130214 ||| | ||||||||||| | | |||| | ||| ||||||||| ||||| | | Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806 Query 130215 CCTTTTTCTCGATACACGGGA 130235 |||| |||| | ||| |||| Sbjct 914807 CCTTCTTCTTCACACATGGGA 914827 >seq212 Length=676889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 179065 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 179124 ||||| || || ||||||| || ||||| |||||| ||| ||| ||||| |||||| Sbjct 82505 TCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAATATTG 82564 Query 179125 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 179184 || ||| || || | | || || ||||||||||| || ||| ||||||||||| Sbjct 82565 TTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGTTCCCATGAGTGAGACTTCACCA 82624 Query 179185 TGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCATCC 179244 || |||||||| || | || || || | | || ||||| ||||| || | || | | Sbjct 82625 TGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTCTTTC 82684 Query 179245 TTGAGGTTCTTGTGGAAGCACGCATACATCACCT 179278 ||| ||| | | || || | ||| || |||| Sbjct 82685 TTGTCATTCCTTTTTAAACAAGTATAAATTACCT 82718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618386784254280