Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq93 125 8e-24 seq212 111 2e-19 seq122 105 8e-18 >seq93 Length=974399 Score = 125 bits (138), Expect = 8e-24 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 ||| | ||||| ||||| | || ||| | | ||||| || |||||||| ||||||||| Sbjct 914846 TTTAATGCCATTGAAACACTCCCATGTGTGAAGAAGAAGGCCGATTGGGCCATGAAGTGG 914787 Query 94777 TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGT 94836 ||| | |||| | |||||||||||| | | || ||||| ||| |||||| Sbjct 914786 ATTGCTCATGAGTCTGCCACGTTTGCTGAGCGAGTAATTGCCTTTGCTGCTGTGGAGGGT 914727 Query 94837 ATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 94895 |||||||||||||| ||| ||| || |||| ||||| |||||| |||| || ||||| Sbjct 914726 ATCTTCTTCTCTGGAAGCTT-TGCTGCCATTTTCTGGCTTAAGAAGAGAGGGCTTATGCC 914668 Query 94896 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 |||||| |||| ||| ||| | || || || || |||| Sbjct 914667 AGGTCTTACCTTCAGCAATGAGTTGATTTCACGAGATGAGG 914627 >seq212 Length=676889 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 || ||||| || ||||||| ||||||||||||||| ||| ||||||||| |||||| Sbjct 82505 TCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAATATTG 82564 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || ||| || || | | || || ||||||||||| || ||| ||||||||||| Sbjct 82565 TTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGTTCCCATGAGTGAGACTTCACCA 82624 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 |||||||| || | ||||| || | | || ||||| |||||||| | || | | Sbjct 82625 TGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTCTTTC 82684 Query 168638 TTGAGATTC 168646 ||| |||| Sbjct 82685 TTGTCATTC 82693 >seq122 Length=4874392 Score = 105 bits (116), Expect = 8e-18 Identities = 281/420 (67%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 9475 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9534 || ||||| ||| ||||| |||||| || ||| | || | || ||| |||||||| Sbjct 3848120 CAGGATCTGCTCACGTCCGCGAACATCCGGCAGACCAACGACAACCTGACGGTCAAAGCG 3848179 Query 9535 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9594 || ||||| || ||||| || || | ||| || || || |||||||| || | Sbjct 3848180 GCCCGGACGCAGCAGCGCAGGGTCGAGTACGTCAGGACGGTTAGTTGCGGCGATAACGAT 3848239 Query 9595 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9651 || ||| ||||| || || || |||||||| || | ||||| | || || Sbjct 3848240 GATGCCT---TCATTGCCTTCGAAGCCGTCCATCTCAACCAGCATCTGGTTCAACGTCTG 3848296 Query 9652 TTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9710 || || ||||| | | | || ||| |||| ||| || || |||||||| | Sbjct 3848297 CTCACGCTCATCGTGACCACCACCTAA-ACCGGCACCGCGCTGACGGCCAACGGCATCGA 3848355 Query 9711 TCTCATCAATGAAGACGATGCATGGTT-GATTTTCGCGAGCGACTTCAAAGAGATCCCGT 9769 ||||||| || |||| |||||| ||| | |||| ||| ||| || | || || Sbjct 3848356 TCTCATCGATAAAGATGATGCACGGTGCGGCTTTCTT-AGCCTGTTCGAACATGTCGCGC 3848414 Query 9770 ACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GAT 9828 ||||| || || |||||||||||||| || || |||| | ||||| || | | Sbjct 3848415 ACACGAGATGCACCTACACCAACAAACATTTCAACGAAGTCAGAACCGGAA-ATGGTAAA 3848473 Query 9829 GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || || || | |||||| ||||| ||| || || || || ||||| ||||| || Sbjct 3848474 GAAAGGCACTTTTGCTTCACCGGCAATCGCTTTTGCCAGCAGGGTTTTACCGGTACCCGG 3848533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583215137970120