Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq4 105 5e-18 >seq4 Length=4567600 Score = 105 bits (116), Expect = 5e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 || || ||||| || || || ||| || || |||||||||||||| ||||| || ||| Sbjct 989145 TGAGCTATCATATAAGTAAGGAGAGCATAGCTGGCAATGTTAAATGGGACACCCAGTCCC 989086 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTG- 111905 |||||| | || |||||||| || ||||| || |||| | | || |||||||||||| Sbjct 989085 ATATCTGCTGACCTTTGATAGAGTTGACAAGACAGTTCACCATTTGCCACATAAAATTGC 989026 Query 111906 ACAAAGTACATGACAAGGAGGCAATGCCAT 111935 |||| | | ||| ||||| || || ||||| Sbjct 989025 ACAAGGCA-ATGGCAAGGCGGTAAAGCCAT 988997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391915682669869