Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq212 91.5 2e-13 >seq212 Length=676889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || |||| || || || |||| ||||| ||||| || || Sbjct 82478 GTGAAGATGTAACGAGCACTGGCAGAGTCTTTACCTCCAGTGAGACGTGTACCAAACTGA 82537 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | ||| | || || | |||||| || | | | |||||||| ||||||||| Sbjct 82538 CCATTGGGCATAAGAAGATTAATATTGTTGCTACCAATATAATTTTGAGCTAAGTTGACA 82597 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || ||| | ||||||||||| || || | || || || || | || Sbjct 82598 ATCGTTCCCATGAGTGAGACTTCACCATGGTGGTAAGCTGAATGTTCTGCTACTGAACCA 82657 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 || | ||||||||| || | ||| | |||| ||| | || | || | |||||| | Sbjct 82658 GCTAACTGAGCCACTTTTACTTCTTTCTTGTCA--TTCCTTTTTAAACAAGTATAAATTA 82715 Query 117543 CCT 117545 ||| Sbjct 82716 CCT 82718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547173159827400