Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq43 183 3e-41 seq3962 176 5e-39 seq19 152 6e-32 seq275 136 5e-27 >seq43 Length=2082672 Score = 183 bits (202), Expect = 3e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || |||||||| |||||||| || ||||| | Sbjct 901073 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTC 901132 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| || | ||||| ||||| || ||||| || || || || ||||| || Sbjct 901133 TGATTCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCA 901192 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| ||||| || || |||| ||| ||| | | ||||| || Sbjct 901193 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACAA 901252 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||| ||||| |||||| | ||||| ||||||||| | |||||||| || Sbjct 901253 TATCCAGAAGGAGTCCACTTTACATCTTGTCTTGCGTTTGCGCGGTGGGCA 901303 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||| ||||||||| | Sbjct 900846 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 900905 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||| | || | |||||||| || ||||| || ||||| || || ||||||||| Sbjct 900906 GATTCCATCGAGAACGTCAAGGCTAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAG 900965 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| |||||||| || || |||| ||||| | | ||||| ||| Sbjct 900966 CAGAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGCCGTACTTTGTCTGACTACAAT 901025 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||||||||| || ||||| ||| | ||||| || |||||| Sbjct 901026 ATTCAGAAGGAATCCACCCTCCATCTTGTCCTCCGTCTGCGTGGTGGA 901073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || |||||||||||| | Sbjct 888118 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCTCG 888177 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || ||||| ||| ||||||| || || |||||||||||||| || || Sbjct 888178 GACTCCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCC 888227 >seq3962 Length=6517 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| |||||||||||||| || || || ||||||||| | Sbjct 6098 AATGCAGATTTTTGTCAAGACTCTTACCGGCAAGACCATCACACTAGAGGTTGAGCCCTC 6157 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| |||| ||| ||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 6158 TGACTCAATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCA 6217 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| ||||| || ||||||| || ||||| | |||||||| Sbjct 6218 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCTGACTATAA 6277 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| |||||||| || ||||| ||||||||| | Sbjct 187 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 246 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||| | || | |||||||| || |||||||| ||||| || || ||||| ||| Sbjct 247 GATTCCATCGAGAACGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 306 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || |||||||||||||| | || ||| | | ||||| || Sbjct 307 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCTTGTCTGACTACAAC 366 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || ||||| || | ||||| || ||||| Sbjct 367 ATCCAGAAAGAATCCACCCTCCATCTTGTTCTCCGTCTGCGTGGTGG 413 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507 || ||||||||| | || ||||| ||| |||||||||| || |||||||||||| Sbjct 1 CTGGAGGTTGAGCCCTCAGACTCCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAG 60 Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || ||||| |||||| | || || || || || |||||||| ||||||| || Sbjct 61 GGCATCCCCCCAGATCAGCAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGC 120 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||| | | ||||| || |||| || ||||| || || ||||| || | ||||| || Sbjct 121 ACCTTGTCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTTGTTCTCCGTCTGCGT 180 Query 27628 GGTGG 27632 ||||| Sbjct 181 GGTGG 185 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || ||||||||| | ||| || | ||| | ||| Sbjct 5813 CTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCTCAGATTCTATCGAGAATGTTAAG 5872 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || ||||||||||| ||||| ||||| |||||| | | ||||| ||||| Sbjct 5873 GCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGAGATTGATTTTCGCTGGC 5932 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 |||||||| ||||||| || ||| | ||||||| || ||||||| Sbjct 5933 AAGCAACTTGAGGATGGCCGCACCTTGTCAGACTACAACATCCAAAA 5979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||||||||||||||| || || || ||||||||| | Sbjct 6408 ATGCAGATTTTCGTTAAGACGCTTACCGGCAAGACCATCACCCTGGAGGTTGAGCCCTCA 6467 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || ||||| ||| |||||||||| || |||||||||||||| || || Sbjct 6468 GACTCCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCC 6517 >seq19 Length=2947477 Score = 152 bits (168), Expect = 6e-32 Identities = 128/157 (82%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| |||||||| || ||||||||||| ||| | Sbjct 340748 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGCCCTCA 340689 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||||| ||| |||||||||| |||||||||||||| || || || ||||||||| Sbjct 340688 GATTCCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 340629 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||||||| || || ||||| ||||| || || |||| Sbjct 340628 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATG 340592 >seq275 Length=398669 Score = 136 bits (150), Expect = 5e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 ||| |||||| |||||||| || || || || || || ||||| || | |||||||| Sbjct 170531 CTACAATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAAC 170590 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | || |||| || | || || ||||||||||||||||| ||||| || |||| Sbjct 170591 CCTCAGACTCTATTGAGAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAG 170650 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 ||||||||||||| ||||||||||| ||||| || ||||||| || || || |||||| Sbjct 170651 ACCAGCAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACT 170710 Query 27581 ATAATGTCCAAAA 27593 | || | ||||| Sbjct 170711 ACAACATTCAAAA 170723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265751824560