Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq122 729 0.0 seq1959 107 8e-19 >seq122 Length=4874392 Score = 729 bits (808), Expect = 0.0 Identities = 971/1345 (72%), Gaps = 23/1345 (2%) Strand=Plus/Minus Query 149 TTTGTTCACTTGCTAATGCGTACATATTGAGTACAGAATACATTATAAACTTGTGTACAG 208 || |||||||||| | |||||||| ||||||||||||||| ||| | |||||||||| Sbjct 2987981 TTCGTTCACTTGCCATTGCGTACACATTGAGTACAGAATAGATTTCAGTGTTGTGTACAG 2987922 Query 209 GATA-TAAAGCATTGGCACTGAGCGACACCAAACTACGAGGCCTCTACGGAAAACCCTAC 267 |||| |||| | |||| || ||||| || || || || || | |||||||| | ||| Sbjct 2987921 GATACTAAA--AGTGGCTCTCAGCGATACAAAGCTTCGCAGCATAAACGGAAAATCATAC 2987864 Query 268 TCTGGCCCTGCTGAAATCACCGATGGTGACGGGTTAAGTGTGCGGATTACTCCAGCAGGA 327 |||||||| ||||| | |||||||| |||||||||||||| || || || ||| | || Sbjct 2987863 TCTGGCCCACCTGAAGTGACCGATGGGGACGGGTTAAGTGTCCGCATAACGCCAACTGGG 2987804 Query 328 ACTATCACGTTTCAGTACCGTTATCGCTGGAATGGTAAGCCAGTACGTCTTACTGTCGGG 387 || || || || ||||| || || ||||||||||| | || || || | || || || Sbjct 2987803 ACCATAACCTTCCAGTATCGATACCGCTGGAATGGAAGCCCCGTTCGCATAACCGTTGGC 2987744 Query 388 CGCTATCCGTCTACTTCACTGAAGGACGCGCGTGTTATCGTCGGTGAGATGCGCGCATTG 447 ||||| || |||||||| || ||||| || || | ||| || ||||||||||||||| Sbjct 2987743 CGCTACCCCTCTACTTCGCTAAAGGATGCCCGGATCGCCGTTGGCGAGATGCGCGCATTG 2987684 Query 448 TACATGAAGGGAGTTAACCCTAAAAATTATTTTGCGCCCAGTGACGGCGAACTGACATTA 507 |||| |||||| || ||||| |||| |||||||| ||| || ||| |||| | Sbjct 2987683 TACACGAAGGGGGTAAACCCAAAAACCTATTTTGCCAGCAGCTCGGGTGAATTGACTCTT 2987624 Query 508 AAAGAATGCCTGGATCAGTGGTGGGATAAGTATGTTACTGATCTGAAACCCAATACACAG 567 | ||||||| || ||||||||||| |||||||| || | |||||| ||||| | Sbjct 2987623 CAGCAATGCCTCGACCAGTGGTGGGAAAAGTATGTGACCGGGCTGAAAGAGAATACCCGC 2987564 Query 568 ACGCTTTACAGATCCGTCGTGTACAACACTATGTACACACAGTT---TGAAGGCTCGCCA 624 | || |||| || |||||||||||||| ||||||||||| || || | | || Sbjct 2987563 ATCCTGTACAAGTCAGTCGTGTACAACACCATGTACACACAATTCCGCGATGTC---CCG 2987507 Query 625 GTTGCCAGTATCCCAGTATCGGCATGGGCTCGTTTCTTTGACAAACAAGAAAGCCTCAAC 684 || || || | |||||||| |||| | ||||| || || || || |||| || Sbjct 2987506 GTCGCTAGCGTACCAGTATCCCTGTGGGTCCAGTTCTTCGATAAGCAGGAGAGCCAGAAT 2987447 Query 685 AAGAAAAAGGCTCGTGTTTTGTTGTTACAACTGCGTTCAGTTATTAACTGGTGTATCAGC 744 ||||| || || | || | || | || |||||||| || || |||||||| |||||| Sbjct 2987446 AAGAAGAAAGCGAGAGTGCTTCTGCTGCAGCTGCGTTCTGTAATGAACTGGTGCATCAGC 2987387 Query 745 CGCCAGTTAATCCCATCATGCGAATTACTCAAGCTTAGTGTTAAGAATATTGGGAAAAAA 804 || ||| | || |||||||| ||| | |||| || || ||||| |||||||| || || Sbjct 2987386 CGGCAGCTCATTCCATCATGTGAAGTCATCAAACTCAGCGTTAAAAATATTGGCAAGAAG 2987327 Query 805 CCAGATGTAGGGAGTCGTGTACTTACCTATACGGAACTGGCAAAAATTTGGCTGGCGCTG 864 |||||||| || || || | || || || || ||||| ||| | |||||||||||| Sbjct 2987326 CCAGATGTTGGCGTGCGCGTGTTGACTTACACAGAGCTGGCGAAAGTGTGGCTGGCGCTG 2987267 Query 865 GAGAACTCAAAAGTAGTTACTTCCAACAAGGTGTTACATCAATTGCTATTGCTATGGGGG 924 || || || || || | || |||||| || | ||||| |||| |||| ||||| Sbjct 2987266 GAAAATAACAAGGTGTTTTCATCTAACAAGCTGCTGCATCAGATGCTGCTGCTGTGGGGA 2987207 Query 925 GCCAGACTTTCTGAGCTACGTCTCGCGACAGCCAGTGAGTTCAACATGGAAGATCTGGTC 984 |||||| | || || || || ||| | || | ||||||||||| ||||| | | Sbjct 2987206 GCCAGATTGTCAGAACTTCGGCTCTCAACCCCTGCTGAGTTCAACACTGAAGACTTCATA 2987147 Query 985 TGGACAACCCCAAAAGAGCATTCAAAAATGGGGAATATTATCCGGCGTCCGGTATTCACT 1044 ||||| || || | ||||| || ||||||||| ||||||| || || |||| Sbjct 2987146 TGGACTACACCTGTCGCCCATTCGAAGATGGGGAATGTTATCCGCCGCCCTATATTTGAG 2987087 Query 1045 CAGGTTAAACCTTATATCGAGAGATTGCTTAATGCGGGTTTTGA-------TGTGCTATT 1097 ||| | || || ||| | || || ||| |||| ||| || | || Sbjct 2987086 CAGATGAAGCCATATGTTGAAAG---GCTACTTGCG----ATGAAAACCCCGGTAATGTT 2987034 Query 1098 CCCCGGGCAGGAAATAGATAAACCTATTGATCGTTCGTCGGCTAATTTGTACATGAAAAA 1157 |||||| |||||| | || ||| | || || || || || || ||| ||||||||||||| Sbjct 2987033 CCCCGGACAGGAACTGGACAAAGCGATCGACCGATCCTCCGCAAATCTGTACATGAAAAA 2986974 Query 1158 GTTAAGGGAGAAAATTGATATTCCTGAATGGAGAACGCATGATTTTAGGCGTTCTCTGGT 1217 | | ||| || ||||| || |||||| | || |||||||| ||||| || ||||| Sbjct 2986973 CCTGCGCACGAAGATAGATATCCCCGAATGGCGCACTCATGATTTCAGGCGCTCACTGGT 2986914 Query 1218 AACGAATTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGA 1277 || || ||||| || ||||| || |||||||||||||| ||||| |||||||||||||| Sbjct 2986913 TACCAACTTATCAGGCGAAGGTATCATGCCCCACGTCACCGAAAAGATGCTGGGGCATGA 2986854 Query 1278 ACTTGGGGGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGC 1337 || || || || ||||| || ||||| ||||| |||||| | ||| ||| | || Sbjct 2986853 GCTGGGCGGGGTAATGGCGGTTTATAACAAACATGACTGGCTTGAGGAGCAGCGCAAAGC 2986794 Query 1338 GTATGAGTTGTATGCTGATAAAATTTTCTGGCACGCTAAACAGCTCGGTTAATTCCTCCG 1397 |||||| | || ||||||||| | | ||||||| |||||||||||||| | || || Sbjct 2986793 CTATGAGCTTTACGCTGATAAAGTCCTGTGGCACGTTAAACAGCTCGGTTGACACCGCCA 2986734 Query 1398 GCTTTAAGCCATTGTTCAACGGCCTGACGACTATATCGCGCCGGATGAGTAAGTACTGGT 1457 | | | ||| | || ||| ||| || || |||||||| || |||||||| || || Sbjct 2986733 TCATCTACCCACTTTTTAACAGCCCTGCGGCTGTATCGCGCAGGGTGAGTAAGAACAGGG 2986674 Query 1458 TCCGGGAATCCGTGtttttttCGCA 1482 | ||||| ||||| || ||||||| Sbjct 2986673 GCAGGGAAGCCGTGGTTCTTTCGCA 2986649 Score = 410 bits (454), Expect = 5e-110 Identities = 761/1105 (69%), Gaps = 19/1105 (2%) Strand=Plus/Minus Query 22874 ACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACAC 22933 || |||||||| | |||||||||||||||||||| || || || |||||||||| ||| Sbjct 2976745 ACACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCAC 2976686 Query 22934 ATGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGACAGAGACATCAGGGTTCTTGGACTT 22993 |||||||||||||| || |||||| ||||||| ||| | ||||| | ||| | || || Sbjct 2976685 ATGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGACCGCGACATTCGTGTTGTCGGGCTG 2976626 Query 22994 TCCGGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGCTCAAGCCTACA 23053 || || || || ||| | | |||||||| |||| ||||| |||| |||| || || Sbjct 2976625 TCTGGAACGCCTTTCTCGCCGTGGATGGGCCAGTATTACGAGCGCCTCATCAAACCCACC 2976566 Query 23054 ACGATTCGTGAACTTATTCAGCGT-GGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTC 23112 ||||| || || || ||| | ||||| || || ||||| |||| || || | Sbjct 2976565 ACGATGAAAGAGCTGATA-AGCATTGGTGACCTTAGTCCCTACGAATTTTACGCGCCGAC 2976507 Query 23113 AATGCCTGATCTGGCTGGCGTAAAAAC---CAGTAACACCGTATTTGGACGGGATTACAA 23169 | ||||| || || |||||||| ||| | | ||||||||| || ||||| Sbjct 2976506 TACACCTGACTTGAAAGGGGTAAAAACTTCCAGCCTGTCGGGATTTGGACGCGACTACAA 2976447 Query 23170 CGAGGAGCAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTTCGCAA 23229 ||| || ||| | || || ||||| | | | | |||| ||||||||||| |||| Sbjct 2976446 CGAAGACCAGTTGGCCGAGATTATGGGTGATGCCGCTTTGGTGGGCGATATCGTCAGCAA 2976387 Query 23230 CTGGCTTGAGAATGGCGAGGATTTGCCGACGATCTGCTTCTGCGTGAATGTTGCGCATGC 23289 |||||| |||| |||||||| ||| || | |||||||| || || | ||||| Sbjct 2976386 CTGGCTGCAGAACGGCGAGGACCGGCCAACTGTTTGCTTCTGTGTCAACCAGTCTCATGC 2976327 Query 23290 GAATTTTGTTACCCGTGAGTTTTTACAGGCCGGTATTGGTGCAGAGGTGATGACGGCAGA 23349 || | || ||||||| | || || | | || ||| | |||| | | Sbjct 2976326 CGGGTTCATAACGACTGAGTTTAACCGTGCTGGAGTGGCGGCGGAGATCATGATTGATGC 2976267 Query 23350 TAC-CCTCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGCGCGACCAAAA 23408 || || ||| |||||||| | || |||| || || ||| |||||| || || | Sbjct 2976266 CACTCCGCCA-GATGAACGTCGAATGATTATTCATCGCTTCGAACAGGGCGTAACGAAGA 2976208 Query 23409 TAATTGTCAACGTTGGTGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATCT 23468 |||| || ||||||||||| ||| || || |||||||||||||| || ||| | |||| Sbjct 2976207 TAATCGTTAACGTTGGTGTGCTGACCGCAGGCTTTGACAGCGATGTACGGTGCATCATCT 2976148 Query 23469 ACGCCCGTCCGACAAAATCAGAAATCCGTTGGTTGCAGTGCATAGGTAGAGCGTTACGTA 23528 | |||||||| |||||||||||||| || ||| | ||| | ||| | | | || | Sbjct 2976147 ATGCCCGTCCAACAAAATCAGAAATGCGCTGGATTCAGGTGTTGGGTCGCGGACTCCGCA 2976088 Query 23529 CAGCCCCAGGTAAAAAACGTGCGTTGATTTTTGACCATTCTGGTACGGTTCATCGGCTGG 23588 | || ||||| ||| | | | |||||||||| || |||| | || || |||| Sbjct 2976087 CGGCACCAGGGAAAGACCATTGTCTGATTTTTGATCACAGCGGTAGCATACACCGCCTGG 2976028 Query 23589 GCTTCCCCGAGGATATCGAGTATGACGAACTGCCGGGTAAAAATGACGGAATGAAAGCGT 23648 ||| ||| || || |||||||||||||| || || |||| |||||| |||||| | Sbjct 2976027 GCTACCCGGATGACATCGAGTATGACGACTTGAGCGGCAAAAGTGACGGCATGAAATCAG 2975968 Query 23649 CTGCTGGCGGTGGCGA---GGTTAAGGCTGAGAAACTTCCCAGAGAATGCCCCAAATGCC 23705 |||| || || |||| | ||| ||||| |||| ||| || | | |||| Sbjct 2975967 CTGCAGGTAGTAGCGAACCTGAGAAGATCGAGAAGAAACCCAAAGAGTGTTCGCAGTGCC 2975908 Query 23706 ACTTCATGAAGCCTGCTGGTGTACACATGTGTCCCAAATGTGGGTTTCGTCCTCTTGGTG 23765 | ||||||||||||||||| ||| | | || || || ||||| || ||| | |||| Sbjct 2975907 ATTTCATGAAGCCTGCTGGGGTATATGTATGCCCGAAGTGTGGATTCAAGCCTGTAGGTG 2975848 Query 23766 GCGATGATGTGGCAACAGACCGCGATCGAAAACTCTCTCGCGTAAACAAAGGGAAACGC- 23824 | || | || | ||| ||| || ||||| ||| || || ||||| | Sbjct 2975847 GAGAGAACGTAGAAACGGACACTACCCGCAAACTGCACCGCCTA---AAGGGGAATGTCA 2975791 Query 23825 GAA--TACAGTCGCGAGGAAAAGCAGCGTTGGTGGAGTGAGATCAAGGGGTATCAGAATT 23882 ||| || || ||| |||| |||||| ||||||||| ||||||||||||| ||| | Sbjct 2975790 GAACCTATAGCCGCAAGGATAAGCAGTCATGGTGGAGTCAGATCAAGGGGTACCAGCGCT 2975731 Query 23883 ACCGC-AACGCGACG--GGTAAACCCCTGAGTGACGGATGGTGCGCTCATACCTACAAGG 23939 ||||| || | ||||| | ||| ||||||||||||||||| | || || Sbjct 2975730 ACCGCGCACTTAGTGGTGGTAAGAATTTATCTGATGGATGGTGCGCTCATACTTTCAGGG 2975671 Query 23940 AGAAGTTCGGTGTGTGGCCTAAAGG 23964 | |||||||| | ||||| || || Sbjct 2975670 ATAAGTTCGGAGAATGGCCAAATGG 2975646 Score = 149 bits (164), Expect = 3e-31 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 22758 ACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTAT 22817 ||||||| || | || || | | ||||||||||| ||| ||||||| | ||| | Sbjct 2983957 ACCAGACTGCTCAGCGGTTTATACAGTACGGTTTGCCAGAGGAGCAAATCAGCTATGTCT 2983898 Query 22818 GGCGTGATCACC---CTAACTATGACCCGTCACGACTGATTCAGATTGCCAGTGCCGACA 22874 |||| ||| ||| || || || | | ||||| ||||||||||| || |||| Sbjct 2983897 GGCGCGATTACCAGCCTCACGATCA---GAGCCGACTAATTCAGATTGCTTCAGCAGACA 2983841 Query 22875 CGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACA 22934 | |||||||| | |||||||||||||||||||| || || || |||||||||| |||| Sbjct 2983840 CACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCACA 2983781 Query 22935 TGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGA 22968 ||||||||||||| || |||||| ||||||| || Sbjct 2983780 TGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGA 2983747 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 27107 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 27163 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 217266 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 217207 Query 27164 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 27201 | |||||||||||||| |||||| ||||||||| || Sbjct 217206 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 217169 >seq1959 Length=43063 Score = 107 bits (118), Expect = 8e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 27122 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 27181 |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 8111 CGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCAAA 8170 Query 27182 TCCAGCAAGGGCCACCA 27198 ||||| ||||| ||||| Sbjct 8171 TCCAGTAAGGGTCACCA 8187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203280482352790