Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq275 109 3e-19 seq3962 87.8 1e-12 >seq275 Length=398669 Score = 109 bits (120), Expect = 3e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||||||||| || ||||| ||||| ||| | || ||||| || || || ||||| || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AA 34637 | |||||| ||||| || || | ||| |||||||| ||| ||| | ||| ||| | Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACGTTCTC 170605 Query 34638 AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 ||| | |||| | || || || | ||| || ||||| || || | ||||||||||| Sbjct 170604 AATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAA 170545 Query 34698 AATCTGCAT 34706 |||||||| Sbjct 170544 GATCTGCAT 170536 >seq3962 Length=6517 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| ||||||||||| || || || ||||| | || ||||| || || || ||||| Sbjct 6289 CCTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 6230 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||| ||||| || || | ||||||||||| ||| ||| | || || | Sbjct 6229 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGAT-TTTGGCCTTCACATT 6171 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||||| ||| | ||| || || | || || || || ||||| | || || || Sbjct 6170 CTCAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGAC 6111 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 6110 AAAAATCTGCAT 6099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314705576591279