Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq122 93.3 4e-14 seq154 87.8 2e-12 >seq122 Length=4874392 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69245 GTTGCTTTCACAGCCATACCCAGTGAATCACGGGTTGTGTACTGGGTGGTAAAGGAACCA 69304 || ||||||| || | ||| | | ||||| || |||||||| ||| | || || Sbjct 3983320 GTCGCTTTCATGGCGAAACCAAAGGTGTCACGCGTGTTGTACTGGTACGTATAAGACCCG 3983379 Query 69305 ACACCGTACACGATATTGCTGGATGCAAAGCCTTTATCTCTCAGACGTTCAAAGATGTCT 69364 || ||| |||| | ||||||| ||||||||||| | |||||| | ||| | Sbjct 3983380 ACGCCGAACACCACATTGCTGCTGGCAAAGCCTTTGGCCTCCAGACGACTCAGGATCTGA 3983439 Query 69365 TTTGCACGCGCGACAGTGATAGAATCACCGTAGATCAGACCAATATGACTATCAAGAACC 69424 || |||||| ||| || || || || |||||||||||||| | || || || ||| Sbjct 3983440 TTGGCACGCTCGAGGGTAATCGAGTCGCCGTAGATCAGACCCACGTGCGGGTCCAGCACC 3983499 Query 69425 TTATAGCCCTTGGAATTAACTTCACCACCGAAAATATCCCA 69465 || |||||| ||| ||| || || ||||| || ||||| Sbjct 3983500 TTGTAGCCCCTGGCATTGACCGTGCCGCCGAAGATCTCCCA 3983540 >seq154 Length=560718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 101417 TGACCGTGATTACGTGGTTGTGGGTGCAACACACGAAGAGATGATTGAAAAAGGTT-TCA 101475 ||||||||||| ||||| || || || || | ||| | || | | | | || | ||| Sbjct 52841 TGACCGTGATTGGGTGGTGGTTGGCGCGACCCCCGATGCACTGTTAGCACAGGGCTATCA 52900 Query 101476 CCCAGGTTGGCGCTGCTTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCAC 101535 | || | || || ||| ||||| | | ||||| || | |||||||| || | Sbjct 52901 GCAAGCGGGTCG-TGATTTTCCGGTATTTCTCCATCCGACCACTCACGAAGAATATGCCC 52959 Query 101536 TGGCCCGTACTGAGCGTAAAACTGGTGAAGGCCATACTGGCTTTGAGACCTTCTTCAGCC 101595 | |||||||| ||||| ||||| ||| || |||| || ||||| || || | | Sbjct 52960 TTGCCCGTACCGAGCGCAAAACCGGTAGCGGTTATACCGGTTTTGATACGCGTTTTACAC 53019 Query 101596 CGGATGTAACTCTGGAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGCTA 101655 |||| || || || || || ||| | ||| || || ||||| |||||||||||||| Sbjct 53020 CGGAAGTCACGCTTGAGGACGATCTGCAGCGCCGCGATCTGACCATCAATGCGATGGCGC 53079 Query 101656 AAGAC 101660 ||||| Sbjct 53080 AAGAC 53084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457394588917560