Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq122 370 4e-98 seq1959 107 7e-19 >seq122 Length=4874392 Score = 370 bits (410), Expect = 4e-98 Identities = 762/1109 (69%), Gaps = 27/1109 (2%) Strand=Plus/Plus Query 13459 CCTTTAGGCCAAACCCCGAACTTCTCCTTGTAGGTATGAGCACACCATCCGTCACTCAGT 13518 || || ||||| | |||||||| ||| || | |||||||| |||||||| ||| | Sbjct 2975646 CCATTTGGCCATTCTCCGAACTTATCCCTGAAAGTATGAGCGCACCATCCATCAGATAAA 2975705 Query 13519 GGCTTACCTGTCGC---GTT-GCGGTAATTCTGATACCCCTTGATCTCGCTCCACCAACG 13574 |||||| | | || |||||| ||| ||||||||||||| |||||||| Sbjct 2975706 TTCTTACCAC-CACTAAGTGCGCGGTAGCGCTGGTACCCCTTGATCTGACTCCACCATGA 2975764 Query 13575 CTGTTTTTCCTCACGGGTGTA--TTC-GCGTTTCCCTTTGTTGACGCGTGAAAGCTTACG 13631 ||| || |||| ||| | || ||| | ||||| || | | || ||| | | || || Sbjct 2975765 CTGCTTATCCTTGCGGCTATAGGTTCTGACATTCCCCTT-TAGGCG-GTGCA-GTTTGCG 2975821 Query 13632 A-TCGCGATCTGTCGCCACGTCATCACCACCAAGAGGACGAAATCCACATTTGGGACACA 13690 | | | || || | |||| || ||||| | ||| |||||||| || || || | Sbjct 2975822 GGTAGTG-TCCGTTTCTACGTTCTCTCCACCTACAGGCTTGAATCCACACTTCGGGCATA 2975880 Query 13691 TATGCACGCCAGCAGGCTTCATGAAGTGGCATTTGGGGCATTCCCTGGGAAGTTTCTCAG 13750 || || ||||||||||||||||| ||||| | | || || |||| ||||| Sbjct 2975881 CATATACCCCAGCAGGCTTCATGAAATGGCACTGCGAACACTCTTTGGGTTTCTTCTCGA 2975940 Query 13751 CCTTAACC---TCACTCCCGCCAGCAGACGCTTTCATTCCGTCATTTTTTCC-CGGAAGT 13806 ||| | || || | || |||| | |||||| |||||| |||| || | |||| Sbjct 2975941 TCTTCTCAGGTTCGCTACTACCTGCAGCTGATTTCATGCCGTCACTTTTGCCGCTCAAGT 2976000 Query 13807 TCGTCATACTCGATATCCTCGGGGAAGCCCAGCCGATGAACCGTGCCGGAATGGTCGAAA 13866 ||||||||||||| || || ||| ||||||| || || | | ||| || || ||| Sbjct 2976001 -CGTCATACTCGATGTCATCCGGGTAGCCCAGGCGGTGTATGCTACCGCTGTGATCAAAA 2976059 Query 13867 ATCAATGCGCGTTTTTTACCAGACGCAGTACGTAACGCTCTCCCGATGCACTGCAACCAG 13926 |||| | | ||| || | || || || | | | || | ||| | |||| Sbjct 2976060 ATCAGACAATGGTCTTTCCCTGGTGCCGTGCGGAGTCCGCGACCCAACACCTGAATCCAG 2976119 Query 13927 CGGATTTCTGATTTGGTCGGACGGGCGTAGATCAGGCAGCGAACATCGCTGTCAAATCCC 13986 || ||||||||||| || |||||||| ||||| | ||| || |||||||||||||| || Sbjct 2976120 CGCATTTCTGATTTTGTTGGACGGGCATAGATGATGCACCGTACATCGCTGTCAAAGCCT 2976179 Query 13987 GCAACCAGTACGCCAACGTTGACAATTATTTTGGTCGCACCCTCTTCAAAACGGCGAATG 14046 || ||| || |||||||| || ||||| || || | |||| ||| || || |||| Sbjct 2976180 GCGGTCAGCACACCAACGTTAACGATTATCTTCGTTACGCCCTGTTCGAAGCGATGAATA 2976239 Query 14047 ATGTCCTGTCGTTCATCATGGGGGGTATCTGCCGTCATCACCTCTGC-GCCAATGCCAG- 14104 || | |||||||| | || || | | |||| | ||| || |||| | |||| Sbjct 2976240 ATCATTCGACGTTCATCTGGCGGAGTGGCATCAATCATGATCTCCGCCGCCACT-CCAGC 2976298 Query 14105 ACTGTAAAAACTCACGGGTAACAAAGTTCGCATGAGCCACATTCACGCAGAAGCAGATCG 14164 || || ||| |||| || | || ||||||| | || || |||||||| | | Sbjct 2976299 ACGGTTAAA-CTCAGTCGTTATGAACCCGGCATGAGACTGGTTGACACAGAAGCAAACAG 2976357 Query 14165 TCGGTAAATCCTCGCCATTCTCAAGCCAGTTGCTGACGATATCGCCAACCAGATCCGAAC 14224 | || |||||||| |||| ||||||||||||||||||||||| |||| | | | | Sbjct 2976358 TTGGCCGGTCCTCGCCGTTCTGCAGCCAGTTGCTGACGATATCGCCCACCAAAGCGGCAT 2976417 Query 14225 TCCCCATGATGGATGCGAGCTGTTCCTCGTTGTAATCCCGTCCAAATACGGTGTTACTGG 14284 ||||| || || | ||| || |||||||| || ||||||||| | | |||| Sbjct 2976418 CACCCATAATCTCGGCCAACTGGTCTTCGTTGTAGTCGCGTCCAAATCCCGACAGGCTGG 2976477 Query 14285 ---TTTTTACGCCAGCCAGATCAGGCATTGAGGGGGCAAAAAACTCATAATCGCTCAGAT 14341 ||||||| || || ||||| | | || || |||| || || || || | Sbjct 2976478 AAGTTTTTACCCCTTTCAAGTCAGGTGTAGTCGGCGCGTAAAATTCGTAGGGACTAAGGT 2976537 Query 14342 CACCAC-GCTGAATAAGTTCACGAATCGTTGTAGGCTTGATCAGGCATTCGTAGTACTTC 14400 ||||| ||| | | || || ||||| || || ||||| |||| ||||| |||| Sbjct 2976538 CACCAATGCTTA-TCAGCTCTTTCATCGTGGTGGGTTTGATGAGGCGCTCGTAATACTGG 2976596 Query 14401 CCCATCCAGGCTGCGAACGGGGTGCCGGAAAGCCCAAGAACCCTGATATCTTTGTCCCGG 14460 |||||||| | | ||| || || || || ||||| | ||| | || || ||| ||| Sbjct 2976597 CCCATCCACGGCGAGAAAGGCGTTCCAGACAGCCCGACAACACGAATGTCGCGGTCGCGG 2976656 Query 14461 ATAACCTCAAGTAACGCACGACGCTTCATGTGTGCTTCATCGATGATCAGCAGATCGATG 14520 |||| |||||| || ||||||||||||||||| |||||||||| || || || |||||| Sbjct 2976657 ATAATCTCAAGCAAGGCACGACGCTTCATGTGAGCTTCATCGACAATGAGTAGGTCGATG 2976716 Query 14521 TTGTCAGGAAACTCACGACGGATCAGCGT 14549 |||||||||||||| | |||||||| || Sbjct 2976717 TTGTCAGGAAACTCCCTGCGGATCAGTGT 2976745 Score = 149 bits (164), Expect = 2e-31 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 14455 TCCCGGATAACCTCAAGTAACGCACGACGCTTCATGTGTGCTTCATCGATGATCAGCAGA 14514 || ||||||| |||||| || ||||||||||||||||| |||||||||| || || || Sbjct 2983747 TCGCGGATAATCTCAAGCAAGGCACGACGCTTCATGTGAGCTTCATCGACAATGAGTAGG 2983806 Query 14515 TCGATGTTGTCAGGAAACTCACGACGGATCAGCGTGTCGGCACTGGCAATCTGAATCAGT 14574 |||||||||||||||||||| | |||||||| ||||| || ||||||||||| ||| Sbjct 2983807 TCGATGTTGTCAGGAAACTCCCTGCGGATCAGTGTGTCTGCTGAAGCAATCTGAATTAGT 2983866 Query 14575 CGTGACGGGTCATAGTTAG---GGTGATCACGCCATACAAAACTGATTTCTTCCCACGGC 14631 || | | || || || ||| ||| ||||| ||| | ||||||| ||| ||| Sbjct 2983867 CGGCTC---TGATCGTGAGGCTGGTAATCGCGCCAGACATAGCTGATTTGCTCCTCTGGC 2983923 Query 14632 AAACCGTATTCGGTGAAACGTTCCGCTGTCTGGT 14665 |||||||| | | || || | || ||||||| Sbjct 2983924 AAACCGTACTGTATAAACCGCTGAGCAGTCTGGT 2983957 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 10210 ATATGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTC 10269 || ||||||||| |||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 217169 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 217228 Query 10270 ACC-ACTGAGCTAAAGGGCC--GGGCGCAGGATAATAA 10304 ||| ||||||||| ||||| |||||||||| |||| Sbjct 217229 ACCAACTGAGCTATGGGGCCTGAGGCGCAGGATTATAA 217266 Score = 86.0 bits (94), Expect = 2e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 12558 TGCGCATCATTGTCAGCAAAGATAATCAGGTGATTAACGCCAGGTGGCGCAATGAACTTC 12617 |||| ||| | || | || |||| ||| || ||||| |||| |||||| || || ||| Sbjct 2974741 TGCGGATCCATATCCGTGAAAATAACCAGATGCTTAACTCCAGCTGGCGCGATAAATTTC 2974800 Query 12618 TCCATAAAACCGGAGTTCATTGTTGACCACACATTGCAGCGGAAGATTTGACGGCATGAA 12677 ||||||| |||||| || |||||| ||| | | ||| || |||||| Sbjct 2974801 GCCATAAAGTTGGAGTTGATAACTGACCAGGTATTAACGTGATAGAGCTGCTTACATGAA 2974860 Query 12678 AGCGCAGTTTCGATACCCTCGGCTATCCCCAGAGTGGACGACACCGGATACAGGCGTATT 12737 ||||||||||| || ||||| || || || || || || | || || | || |||||| Sbjct 2974861 AGCGCAGTTTCAATTCCCTCAGCGATTCCTAGCGTTGATGCAACAGGGAAAAGACGTATT 2974920 Query 12738 GCCACCGATTTGGCATGCTGCA 12759 || || || | |||| || || Sbjct 2974921 GCGACTGAAGTCGCATACTCCA 2974942 >seq1959 Length=43063 Score = 107 bits (118), Expect = 7e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 10213 TGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 10272 ||||| ||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 8187 TGGTGACCCTTACTGGATTTGAACCAGTGACCTGGCGATTATGAGTCGCAAGCTCTAACC 8128 Query 10273 ACTGAGCTAAAGGGCCG 10289 |||||||||||||||| Sbjct 8127 GCTGAGCTAAAGGGCCG 8111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195175883079982