Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq122 275 6e-69 seq83 95.1 1e-14 >seq122 Length=4874392 Score = 275 bits (304), Expect = 6e-69 Identities = 684/1021 (67%), Gaps = 62/1021 (6%) Strand=Plus/Minus Query 23685 TTCCTGCGGTGTTACTTGCACGTTCCCGGTATTCAGGTGACTGTTGATCCACGGAATCGG 23744 ||||||||| | || |||||||| ||| ||| |||||||||||| ||||| Sbjct 2808688 TTCCTGCGGAGCAACCTGCACGTTATCGGACACCAGCCACGAGTTGATCCACGGGATCGG 2808629 Query 23745 GTTCTTGGTCGGCTT---ACCGATCAGTTCACCCAGGCCAACCGCTCGCATACGCTGGTC 23801 |||| | ||| || | || ||| || ||| ||||| || |||||| || Sbjct 2808628 GTTCGAG--CGGGTTTTAAACGG-CAGATC---CAGACCAACAGCGTTCATACGGATGTT 2808575 Query 23802 GGTGATGTAGTCGATGTAACCGTC-CAGCATACCTTTGTTCAGGCCGATCATCGAACCGT 23860 ||||||||| || ||||| | | | ||| ||| |||| |||||||| ||||| |||||| Sbjct 2808574 GGTGATGTACTCAATGTA-CTGCCACAGAATATCTTTATTCAGGCCAATCATTGAACCGC 2808516 Query 23861 CTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTGCACCGATGCGTCGATAAAGCCCTGTC 23920 | ||||||| | |||| |||||||||||| | | || | || | || Sbjct 2808515 CGCTGAACAGATATTCCGCCCACTCTTTCTCCTGCTCGGCAGCCAGCACGAA--CAGATC 2808458 Query 23921 GT-GC-CTCTTCGTAGCAATCTTCTGCCA-CACGTGCAAA--CAGGTCACCTTCGTTACC 23975 || || ||||| ||| |||| || | | || || | | || |||| || Sbjct 2808457 GTAGCACTCTTGACGGCACTCTTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCACT 2808398 Query 23976 GTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAAATGCAAGGCTTCATCACGAGC 24035 | | ||| | ||||||||| |||||| |||| || |||| |||||||| || || Sbjct 2808397 GCGCAGCAGGT---TCAGCATATGCTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGC 2808341 Query 24036 AATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCCGCGCTCACCGAAAGCGAAGGA 24095 ||||| | ||| || |||| || || ||| | ||||||| | || ||||| || Sbjct 2808340 GATCAGCTTAATGATTTTGGCATTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGA 2808281 Query 24096 GCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAGTGCATTGATGTTGTGCAGACACAG 24155 |||||||||||| ||||| || |||||||||||||| || |||| | | ||| || | Sbjct 2808280 GCAGGCGAAGCTGACGTAAAAGCGGATCGCTTCCAGCGCGTTGACGCTCATCAGGCAGAT 2808221 Query 24156 ATA------------CAGCGCACG-AGCGTGTTTGT-ACGGGTCAACCGGAA----GGTT 24197 ||| |||||| || || || || |||| | || | | ||| Sbjct 2808220 ATAGAGCTGCTTTTTCAGCGCGCGCAGGCTGACGGTCACGGTTTTGCCCGCAACCTGGTG 2808161 Query 24198 CAGGGCCTTG---CGGCAGTT--CAGTTCATACAGGTCATC---AT-ACATCTTCGTCAC 24248 | | ||||| | |||| | |||| | |||||| || | ||| |||| Sbjct 2808160 C-GTGCCTTCACCCAGCAGATGCCAGTAGTT---GGTCATTTCGATCAGATCGTCGTAGT 2808105 Query 24249 CGCC----------TCGGCGCGGGCGATAATCTCCGGCGACTTCATGATGTCGTCAAAGA 24298 ||| | |||||| | | |||| | | | ||| |||||||||| Sbjct 2808104 AGCCAGAGATATCTTTGGCGCGTGACAGGATCTGCTCGTTGGTGACGATATCGTCAAAGA 2808045 Query 24299 CGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGAGCGAGAGTGGATAG 24358 | | || ||| || | ||| ||||| || ||||||||||| || || |||||||||| Sbjct 2808044 CCAGCGCCGGGTCGTTAACGATATTACGAATAATATGGGTGTACGAACGCGAGTGGATAG 2807985 Query 24359 TCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTCGGACACGATCGGGA 24418 |||| ||||||||| || || | ||| |||||||| | | || | | ||| | Sbjct 2807984 TCTCGGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCCGGGATCGAGATCAGCGGCA 2807925 Query 24419 GCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGATCTGGTACTTCAGGT 24478 ||| | ||||||| | || ||||| | ||| ||||| || |||| |||||||||| Sbjct 2807924 GCAACGCCACGTTCGGGCTGCGTCCCTGAATAGAGTCCAGCAGAGTCTGATACTTCAGGT 2807865 Query 24479 TGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTCGATACGGTCACGGG 24538 ||||||| |||||||| || ||||| || ||||| | ||||| ||||| || || | Sbjct 2807864 TGCTGATAAAGATGTGTTTTTCGTGCTCTGGCAGCGCCTGATAGTCAATACGATCGCGCG 2807805 Query 24539 TCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTCGATCAGCTTCTCGA 24598 |||| ||||||||||| ||||||||||| | || ||||| ||||||||||| || | Sbjct 2807804 AGACGTCCACTTCTTCCGGGCGCCAGAAGAAAGAGAGCTGCTTTTCGATCAGCTTTTCAA 2807745 Query 24599 ACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCTCGCCGAGGAACATCG 24658 | || | | |||||||||||| | || | ||||| | || |||| |||||||| Sbjct 2807744 AGATGTCATATTTCTGCTGGTCGAAACGCGCCACGTTTACCGGCTGTCCGAAGAACATCG 2807685 Query 24659 G 24659 | Sbjct 2807684 G 2807684 Score = 178 bits (196), Expect = 1e-39 Identities = 473/711 (67%), Gaps = 35/711 (5%) Strand=Plus/Minus Query 25324 CGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATC 25383 || ||||| |||| |||||| |||| ||| | ||||| || ||||| | |||||| Sbjct 2807174 CGCGGTGGTTCAATACCGTTGGTGGCGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATC 2807115 Query 25384 ATCGTGGACAGCGTAGAGTTACGCAGTCCATGAAT----AGCGATGTCGATACGCAGCTT 25439 | | || ||||||||||| ||||| || || | | |||| || ||||||| Sbjct 2807114 AGGGCAGAGAGCGTAGAGTTGCGCAGGCCGTGGGTTTTCACCGAT-TC---ACGCAGCGC 2807059 Query 25440 TTCCCAATCCATCTTCAGTTTCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTC 25499 |||||| |||| | ||| || | || |||| | || ||||| || ||| Sbjct 2807058 TTCCCAGTCCAGCAGCAGCGGCGTATCACAGATCGCATCCAGGTCCTTCTTATAGGTGTC 2806999 Query 25500 GATCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAAGAGATCACATTTGCCCAGTTC 25559 |||||||| ||| ||||| | || ||||| |||| || || ||| |||| Sbjct 2806998 GATCGGCATAATACCCTGCGCATAGGTGGTTTCGTTAAACCACGGGCAGGCACCCTGTTC 2806939 Query 25560 TTTTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTGGAATGCTTCAG----CCAGTT 25615 | ||||| || || |||| ||||| | ||||| | |||||| | || Sbjct 2806938 GATAGCCAGATCGTTAGAGGCTTTCAGCAACCAGTACTGAATGGCTTCAAAGGTCTGGTG 2806879 Query 25616 CGTGAACAGCATTTGC--TGCACGAGGATCGCTGTACTTCAGGCCACGCTTCGCCAGGTA 25673 ||| | | |||| || ||| || ||| ||| || ||| |||||||||||| Sbjct 2806878 CGTCAGGA-CATTAGCGCTGC-CG----TCGGAGTAACGCACGCCGTTCTTCGCCAGGTA 2806825 Query 25674 ATATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCG--CAGTTTAGTCTT-CTCTGC 25730 || || ||||| || |||||||||||||||||| || | || | | || || Sbjct 2806824 GTAAGCGTAGTTGATCACGCCAATACCCAGAGTACGGCGACCCATTGCGCCACGCTGCGC 2806765 Query 25731 CGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAACC---AGTGT 25787 ||| | | || |||| ||| || || | ||| ||||| ||||| ||| || || Sbjct 2806764 GGCCGGGATTGGGTAGTCCTGGTAGTCCAGCAGGGCATCCAGCGCACGCACCGCCAGGGT 2806705 Query 25788 ACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAG 25847 | ||| ||| ||| ||| ||||| |||| | | ||||||||| | || ||||| Sbjct 2806704 T--GCCAG-CTCCTGCAGGTCGTCCAGGCTCTCAATCGCGCCGAGGTTAAACGCCGACAG 2806648 Query 25848 AGTACACAGGGCCACTTCCCCCGGGTCGTTCGGATCATTAATGTCCGTAATCGGATGTGT 25907 ||||| || || | ||| || |||| | |||| ||| | ||| | || Sbjct 2806647 CGTACAGAGCGCGATTTCGCCATTTTCGT------CGTTAACATCCAGCAGCGGTTTGGT 2806594 Query 25908 CGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAA 25967 |||||| ||||| |||| ||||||||| ||||| ||| || || | | ||||| || Sbjct 2806593 CGGCAGTGCGATCTCCAGGCACAGGTTAGACTGGCGCACTGGCGCGATTGCCGGGTCAAA 2806534 Query 25968 CGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT 26018 ||||| | ||||||||||||||||||| ||| | ||| |||||||| || Sbjct 2806533 TGGGCTGTGGGTGTTGCAGTGGTCAACGTTCTGAATGTAGATACGGCCGGT 2806483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 210/314 (67%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 47987 AGCAGAAAGGCTCTGTTGAACTGCTGTACGATGTGTTCGGTGGCGACCTGAACTCCAAAG 48046 |||||||||| || || ||| |||||| || | ||||| ||| | || ||| | Sbjct 3983566 AGCAGAAAGGGTCGGTCGAAGTGCTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGG 3983507 Query 48047 GCTATCGTACACTCGATACTCACGTCGGCCTGATTTACGGTGACTCCATCACCGTGGCCC 48106 |||| || || | ||||| || ||||| ||||| ||||| || ||| | | | Sbjct 3983506 GCTACAAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGC 3983447 Query 48107 GTGCGAAAGAGATCTTCGAG-CGCCTTGAAGCAAAAGGCTTTGCATCGAACAACGTTGTG 48165 |||| || ||||| | ||| || || || || ||||||||||| | ||| || ||| Sbjct 3983446 GTGCCAATCAGATCCT-GAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTG 3983388 Query 48166 TTCGGGGTCGGTTCCTTCACCACCCAGTTCAACACCCGTGATTCTCTGGGTCAGGCCGTG 48225 ||||| ||||| || | || ||||| |||||| ||||| | | ||| ||| || Sbjct 3983387 TTCGGCGTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATG 3983328 Query 48226 AAGGCTACTGGTGCGGTTATCGACGGTCAGCAGATCATGGTCGTCAAAGAGCCGAAGACC 48285 || || || || | | |||| || | | || ||||| ||||||| ||| Sbjct 3983327 AAAGCGACGTATGGCGAAGTGCACGGAGAGGGGCGTGAGATCTTCAAACAGCCGAAAACC 3983268 Query 48286 GACCTCGGCAAGAA 48299 ||| ||||| ||| Sbjct 3983267 GACAACGGCATGAA 3983254 Score = 82.4 bits (90), Expect = 7e-11 Identities = 201/302 (67%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 16718 TCCTTTGCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACA 16777 |||| || || || || ||||||| || || ||||||| ||||| ||| | || || Sbjct 3700808 TCCTGGGCAATGGCGTTGATGGTCAGATCGCGTCGGGCCAGATCCTGTTCCAGCGTGACG 3700749 Query 16778 TCTGG-GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACG 16836 || || || | | | || |||| || || || ||| | ||||||||| || Sbjct 3700748 TCGGGCGCGGCATAGCAGA-CGAAGCCGGTATAACCGCTGCCGGACTTACGCTCGGTGCG 3700690 Query 16837 GGCCAGGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGAC 16896 ||||| || |||||||| | | | ||| ||||| | || ||||| || || || Sbjct 3700689 CGCCAGCGCATACTCTTCGTGGCTGGAAGGGTGCAGAAATACCGGGAAATCGCGGCCAAC 3700630 Query 16897 TTGCTCGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACG 16956 |||||| |||| ||| ||||| | | | | || || ||||| || |||| Sbjct 3700629 CTGCTCGTAGCCAGCATCCAGCATCTGCTGGGGAGAGGCTCCCACCACCACCCAGTCTTT 3700570 Query 16957 GTCTTTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTT 17016 |||||| | | | || |||| ||||||| || ||||||||||| || || |||| Sbjct 3700569 GTCTTTCAGCGGCAAATTCAGCAGTCCATCGCGCACGGCGCCGCCGACAAGGTATGTTTT 3700510 Query 17017 CA 17018 || Sbjct 3700509 CA 3700508 >seq83 Length=912621 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 25827 GCCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCCGGGTCGTTCGGATCATT 25886 ||| | ||||| ||| || || ||||| || || | || || | |||| || || Sbjct 580570 GCCCAAGTTGAAGGCTGATAGCGTACAGAGAGCGATCTCACCA----CTTTCG--TCGTT 580517 Query 25887 AATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCAC 25946 ||| || | | ||| | |||||||| |||||||| | || ||||| ||||| || Sbjct 580516 AATATCGTTTAACGGTTTAGTCGGCAGCGCGATTTCTAAACAAAGGTTTGACTGGCGTAC 580457 Query 25947 CGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTA 26006 |||||| | || || |||||||||| ||| || ||||||||||||| || | || Sbjct 580456 AGGGGCCACCGCCGGATCAAACGGGCTATGAGTATTACAGTGGTCAACGTTTTGGATATA 580397 Query 26007 AATACGGCCTGTCTGAGAACGCTCCTG 26033 ||||||||| ||| || ||| || || Sbjct 580396 AATACGGCCAGTCGAAGCACGTTCTTG 580370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 260/393 (66%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 23774 CCAGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATAC 23833 |||| || || || ||||||| | ||| || || |||||||| | || ||| Sbjct 582551 CCAGTCCCACGGCATGCATACGAATATTGGTAATATATTCGATGTATTGGCAGAGAATAT 582492 Query 23834 CTTTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCC 23892 |||| |||| ||||||||||| || || ||||||| | |||||| | ||||| ||| Sbjct 582491 CTTTATTCATTCCGATCATCGAGCCATCACGGAACAGGTATTCTGCCC-ACTCTTTTTCC 582433 Query 23893 TGCACCGATGCGTCGATAAAGCCCTGTCGTGCCTCTTCGTAGCAATCTTCTGCCA-CACG 23951 ||| | | || | | || || ||||| | ||| || | || | | | Sbjct 582432 TGCTCAGCAGCCTTTTTGAATAGCTCAAAGCACTCTTGCTCGCACTCAGCAGCAATCTCT 582373 Query 23952 TGCAAA--CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCG 24009 | || | | ||| |||| |||| | ||| || ||||||| ||| ||||| Sbjct 582372 TTCATTTCCGGATCATCTTC---ACCGCTTCGCAGCAGATTTAGCATATGCTGTGTTCCC 582316 Query 24010 GACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATT 24069 | || |||| |||||| || || || || || || || |||| ||||| ||| Sbjct 582315 GTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATTACCTTCCATC 582256 Query 24070 ACGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCC 24129 | | ||||| |||| ||||| || || || ||||||||||||||||| || ||||| Sbjct 582255 AGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACGAATGGCTTCG 582196 Query 24130 AGTGCATTGATGTTGTGCAGACACAGATACAGC 24162 || ||||||| | | ||| || || || ||| Sbjct 582195 AGGGCATTGACGCTCATCAGGCAGAGGTAAAGC 582163 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 24281 TCATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGT 24340 ||| ||| ||||| || || | | ||| || || ||| ||||| || ||||| |||| Sbjct 582011 TCACGATATCGTCGAATACTAGAGCCGGGTCGTTCACGATATTACGAATAATATGAGTGT 581952 Query 24341 ATGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAG 24395 | || || |||||||| || || ||||||||| || || |||||||||||||| Sbjct 581951 AAGAACGTGAGTGGATCGTTTCGGAGAACGCCCAGGTTTCAACCCATGTTTCCAG 581897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478976899160160