Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq437 96.9 4e-15 seq122 86.0 7e-12 >seq437 Length=145597 Score = 96.9 bits (106), Expect = 4e-15 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 139186 CCATTTGTTCCATTTTTAAAGCCAACGCACATAGGCAGGCCTGAAGCAATTTCACGGTGT 139245 |||| ||| ||||||||||||||||| ||| | | |||||| || ||||||||||| Sbjct 36796 CCATCTGTACCATTTTTAAAGCCAACCGGCATTGATAAGCCTGATGCCATTTCACGGTGA 36737 Query 139246 GTCTGACTCTCGGTTGTACGAGCGCCGATTGC-GACCCAAGAGAAAATACCTGTAAGATA 139304 || || || || || || ||||| || || |||| | | | || | | || | Sbjct 36736 GTTTGCGATTCAGTGGTTCGCGCGCCAATCGCTGACCAACTAAATAAGTCACCGAGGA-A 36678 Query 139305 CTTAATCGTGAAT--GGGTCCAACACTTCAGTCGCTAGTGGAAGGCCTAAGCTTAATAGT 139362 || | |||| | || || || |||| || || || || || || | || | Sbjct 36677 CTG--TGGTGAGTTAGGATCTAAGGCTTCGGTTGCCAGAGGGAGCCCCATCGATACCAAC 36620 Query 139363 TCTAAGCAAAGTTCGCGAGCCA-TTTCGAGCCCACGGTTTATGTCAAATGAGCCATTCAA 139421 || | | | || || ||| ||| ||||| | | || ||||||||||||| || Sbjct 36619 TCAACTAATAATTGACGGGCCTGTTTTAAGCCCT-GCTCGATATCAAATGAGCCATCCAT 36561 Query 139422 TTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCAAAATAAAC 139481 | |||||||| || || |||||||| |||||||| || | ||| |||||||| ||||| Sbjct 36560 ATGCGGGTCGTTGATTAATCCTTTCCACCCTACAGTGGTACGTGGCTTCTCAAAGTAAAC 36501 Query 139482 ACGCATAACCAA 139493 ||||| || || Sbjct 36500 GCGCATCACTAA 36489 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 77985 TCTGGTGGCCCCATCCGGACTTGAACCGGAAACCTACCAGTTATGAGCCGGGCGCTCTAA 78044 ||||||||||||| | ||||||||||| | ||| | | ||||||| || | ||||||| Sbjct 217170 TCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTAA 217229 Query 78045 CCAATTGAGCTATAGGGCCTGA 78066 |||| |||||||| |||||||| Sbjct 217230 CCAACTGAGCTATGGGGCCTGA 217251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568285106896440