Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq122 408 2e-109 seq2664 289 1e-73 >seq122 Length=4874392 Score = 408 bits (452), Expect = 2e-109 Identities = 763/1106 (69%), Gaps = 21/1106 (2%) Strand=Plus/Minus Query 21212 ACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACAC 21271 || |||||||| | |||||||||||||||||||| || || || |||||||||| ||| Sbjct 2976745 ACACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCAC 2976686 Query 21272 ATGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGACAGAGACATCAGGGTTCTTGGACTT 21331 |||||||||||||| || |||||| ||||||| ||| | ||||| | ||| | || || Sbjct 2976685 ATGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGACCGCGACATTCGTGTTGTCGGGCTG 2976626 Query 21332 TCCGGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGATCAAGCCTACA 21391 || || || || ||| | | |||||||| |||| ||||| |||| ||||| || || Sbjct 2976625 TCTGGAACGCCTTTCTCGCCGTGGATGGGCCAGTATTACGAGCGCCTCATCAAACCCACC 2976566 Query 21392 ACGATTCGTGAACTTATTCAGCGT-GGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTC 21450 ||||| || || || ||| | ||||| || || ||||| |||| || || | Sbjct 2976565 ACGATGAAAGAGCTGATA-AGCATTGGTGACCTTAGTCCCTACGAATTTTACGCGCCGAC 2976507 Query 21451 AATGCCTGATCTGGCTGGCGTAAAAAC---CAGTAACACCGTATTTGGACGGGATTACAA 21507 | ||||| || || |||||||| ||| | | ||||||||| || ||||| Sbjct 2976506 TACACCTGACTTGAAAGGGGTAAAAACTTCCAGCCTGTCGGGATTTGGACGCGACTACAA 2976447 Query 21508 CGAGGAGCAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTTCGCAA 21567 ||| || ||| | || || ||||| | | | | |||| ||||||||||| |||| Sbjct 2976446 CGAAGACCAGTTGGCCGAGATTATGGGTGATGCCGCTTTGGTGGGCGATATCGTCAGCAA 2976387 Query 21568 CTGGCTTGAGAATGGCGAGGATTTGCCGACGATCTGCTTTTGCGTGAATGTTGCGCATGC 21627 |||||| |||| |||||||| ||| || | ||||| || || || | ||||| Sbjct 2976386 CTGGCTGCAGAACGGCGAGGACCGGCCAACTGTTTGCTTCTGTGTCAACCAGTCTCATGC 2976327 Query 21628 GAATTTTGTTACCCGTGAGTTTTTACAGGCCGGTATTGGCG-CAGAGGTGATGACGGCAG 21686 || | || ||||||| | || || | ||||| | ||| | |||| | | Sbjct 2976326 CGGGTTCATAACGACTGAGTTTAACCGTGCTGG-AGTGGCGGCGGAGATCATGATTGATG 2976268 Query 21687 ATAC-CCTCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGCGCGACCAAA 21745 || || ||| |||||||| | || |||| || || ||| |||||| || || Sbjct 2976267 CCACTCCGCCA-GATGAACGTCGAATGATTATTCATCGCTTCGAACAGGGCGTAACGAAG 2976209 Query 21746 ATAATTGTCAACGTTGGTGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATC 21805 ||||| || ||||||||||| ||| || || |||||||||||||| || ||| | ||| Sbjct 2976208 ATAATCGTTAACGTTGGTGTGCTGACCGCAGGCTTTGACAGCGATGTACGGTGCATCATC 2976149 Query 21806 TACGCCCGTCCGACAAAATCAGAAATCCGTTGGTTGCAGTGCATAGGTAGAGCGTTACGT 21865 || |||||||| |||||||||||||| || ||| | ||| | ||| | | | || Sbjct 2976148 TATGCCCGTCCAACAAAATCAGAAATGCGCTGGATTCAGGTGTTGGGTCGCGGACTCCGC 2976089 Query 21866 ACAGCCCCAGGTAAAAAACGTGCGTTGATTTTCGACCATTCTGGTACGGTTCATCGGCTG 21925 || || ||||| ||| | | | ||||||| || || |||| | || || ||| Sbjct 2976088 ACGGCACCAGGGAAAGACCATTGTCTGATTTTTGATCACAGCGGTAGCATACACCGCCTG 2976029 Query 21926 GGCTTCCCCGAGGATATCGAGTATGACGAACTGCCGGGTAAAAATGACGGAATGAAAGCG 21985 |||| ||| || || |||||||||||||| || || |||| |||||| |||||| | Sbjct 2976028 GGCTACCCGGATGACATCGAGTATGACGACTTGAGCGGCAAAAGTGACGGCATGAAATCA 2975969 Query 21986 TCTGCTGGCGGTGGCGA---GGTTAAGGCTGAGAAACTTCCCAGAGAATGCCCCAAATGC 22042 |||| || || |||| | ||| ||||| |||| ||| || | | ||| Sbjct 2975968 GCTGCAGGTAGTAGCGAACCTGAGAAGATCGAGAAGAAACCCAAAGAGTGTTCGCAGTGC 2975909 Query 22043 CACTTCATGAAGCCTGCTGGTGTACACATGTGTCCCAAATGTGGGTTTCGTCCTCTTGGT 22102 || ||||||||||||||||| ||| | | || || || ||||| || ||| | ||| Sbjct 2975908 CATTTCATGAAGCCTGCTGGGGTATATGTATGCCCGAAGTGTGGATTCAAGCCTGTAGGT 2975849 Query 22103 GGCGATGATGTGGCAACAGACCGCGATCGAAAACTCTCTCGCGTAAACAAAGGGAAACGC 22162 || || | || | ||| ||| || ||||| ||| || || ||||| | Sbjct 2975848 GGAGAGAACGTAGAAACGGACACTACCCGCAAACTGCACCGCCTA---AAGGGGAATGTC 2975792 Query 22163 -GAA--TACAGTCGCGAGGAAAAGCAGCGTTGGTGGAGTGAGATCAAGGGGTATCAGAAT 22219 ||| || || ||| |||| |||||| ||||||||| ||||||||||||| ||| Sbjct 2975791 AGAACCTATAGCCGCAAGGATAAGCAGTCATGGTGGAGTCAGATCAAGGGGTACCAGCGC 2975732 Query 22220 TACCGC-AACGCGACG--GGTAAACCCCTGAGTGACGGATGGTGCGCTCATACCTACAAG 22276 |||||| || | ||||| | ||| ||||||||||||||||| | || | Sbjct 2975731 TACCGCGCACTTAGTGGTGGTAAGAATTTATCTGATGGATGGTGCGCTCATACTTTCAGG 2975672 Query 22277 GAGAAGTTCGGTGTGTGGCCTAAAGG 22302 || |||||||| | ||||| || || Sbjct 2975671 GATAAGTTCGGAGAATGGCCAAATGG 2975646 Score = 149 bits (164), Expect = 3e-31 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 21096 ACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTAT 21155 ||||||| || | || || | | ||||||||||| ||| ||||||| | ||| | Sbjct 2983957 ACCAGACTGCTCAGCGGTTTATACAGTACGGTTTGCCAGAGGAGCAAATCAGCTATGTCT 2983898 Query 21156 GGCGTGATCACC---CTAACTATGACCCGTCACGACTGATTCAGATTGCCAGTGCCGACA 21212 |||| ||| ||| || || || | | ||||| ||||||||||| || |||| Sbjct 2983897 GGCGCGATTACCAGCCTCACGATCA---GAGCCGACTAATTCAGATTGCTTCAGCAGACA 2983841 Query 21213 CGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACA 21272 | |||||||| | |||||||||||||||||||| || || || |||||||||| |||| Sbjct 2983840 CACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCACA 2983781 Query 21273 TGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGA 21306 ||||||||||||| || |||||| ||||||| || Sbjct 2983780 TGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGA 2983747 Score = 84.2 bits (92), Expect = 9e-12 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23002 TGCAGCATGCCAAATCGGTGGCAATACGCCTGTATCCGGTGTCGTCCACTCTGGGGATAG 23061 || || |||| | || || |||||||| || | || || | || || || || || | Sbjct 2974942 TGGAGTATGCGACTTCAGTCGCAATACGTCTTTTCCCTGTTGCATCAACGCTAGGAATCG 2974883 Query 23062 CCGAGGGTATCGAAACTGCGCTTTCATGCCGTCAAATCTTCCGCTGCAATGTGTGGTCAA 23121 | ||||| || ||||||||||||||||| || ||| | | ||| |||||| Sbjct 2974882 CTGAGGGAATTGAAACTGCGCTTTCATGTAAGCAGCTCTATCACGTTAATACCTGGTCAG 2974823 Query 23122 CAATGAACTCCGGTTTTATGGAGAAGTTTATTGCGCCACCAGGCGTTAATCACCTGATTA 23181 || |||||| ||||||| ||| ||||| |||||| | || ||||| || ||| ||| Sbjct 2974822 TTATCAACTCCAACTTTATGGCGAAATTTATCGCGCCAGCTGGAGTTAAGCATCTGGTTA 2974763 Query 23182 TCTT 23185 | || Sbjct 2974762 TTTT 2974759 >seq2664 Length=6989 Score = 289 bits (320), Expect = 1e-73 Identities = 312/412 (76%), Gaps = 6/412 (1%) Strand=Plus/Plus Query 32339 CTGATATGTGGAAAGCCAGTGGTAAAAGTGAATCTGAATCTCCATACCACTACCTGAGAA 32398 |||||||||||||||||||||| ||||| ||| ||||| || ||||| || || | | Sbjct 1 CTGATATGTGGAAAGCCAGTGGGAAAAGCGAAAGCGAATCCCCTTACCATTATCTCCGTA 60 Query 32399 ACAAGCAGACCAAAGAGTTCTTAGCCGAGCTGGAGAAAAACCACGAATCTGTGGTTTTTA 32458 |||| ||||| ||||| ||| | | ||||| |||||||||||||||||||||||||| | Sbjct 61 ACAAACAGACAAAAGAATTCCTGACAGAGCTTGAGAAAAACCACGAATCTGTGGTTTTCA 120 Query 32459 CTGAGCGCGGTGTACACGGTGGAACATATGGCGGGAAGTTTGTTGCTTATGATTATGCAG 32518 ||||||| || || | || || || ||||| || |||||||| || ||||| ||||| | Sbjct 121 CTGAGCGGGGAGTCAAAGGGGGTACTTATGGTGGTAAGTTTGTGGCATATGACTATGCGG 180 Query 32519 CATGGCTAAACCCCGGATTTAAATATGCAGCCTATAAAGTCCTGGATGACTACTTCACCG 32578 ||||||||||||| ||||||||||||||||| || ||||| || ||||| || ||||| | Sbjct 181 CATGGCTAAACCCTGGATTTAAATATGCAGCGTACAAAGTTCTTGATGATTATTTCACAG 240 Query 32579 GAGAACTTCAGCATCGCAACAGCT---TAAGTGCGCAGCTCAATATGAAGTGCCATGAGT 32635 | ||||| || |||| |||| | || || ||| | ||||| || || |||| Sbjct 241 GTCAACTT---CAACGCAGAAGCTCTCTCAGCGCTCAGTTGAATATTAAATGTATGGAGT 297 Query 32636 TTGATCAGAAAAAAGATATGGCGAGCTTCTGTGGACAAGGGCTCGCGGCATGGCGCTATA 32695 |||| ||||| |||||||||||||| || || || || ||| | || | ||| || Sbjct 298 TTGACCAGAAGAAAGATATGGCGAGTTTTTGCGGGCAGGGGTTGGCTGGCTGGAAACATG 357 Query 32696 CGAAGCCAGTGTTGGTCGCTGAGATTAACTCCTTGGCTAACCAGCTGCAGAT 32747 || | || |||| |||||||| || || || | | ||| | ||||| Sbjct 358 AAAAAGCTGTTCTGGTTGCTGAGATAAATTCTCTGACAAGTCAGTTACAGAT 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200983057729316