Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq122 201 1e-46 seq83 176 5e-39 >seq122 Length=4874392 Score = 201 bits (222), Expect = 1e-46 Identities = 346/500 (69%), Gaps = 2/500 (0%) Strand=Plus/Minus Query 128589 GGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 128648 || ||||||| || || | ||| ||| | || || | | |||||| || || | | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 128649 TGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 128708 || || || || || | |||||| | ||||| | || || || ||||||||| || Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 128709 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 128768 || || ||| |||| ||||||| ||||| ||||| ||| |||| ||||| || || || Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 128769 CGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAATA 128828 || || ||||| || |||||||| || || || || ||||||||||| |||| ||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 128829 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCTGCACGAATCATACCT 128888 || || || |||||||| | || || ||||| || ||| Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 128889 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAATTGACGCAGCAGCT-TC 128947 || ||||| || ||||| ||||||| | | ||| || ||| | ||| | || | | Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGC 2805973 Query 128948 GTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAACTGACGTGT 129007 |||||| |||| ||| || || |||| ||||| | ||||| || || ||||| || || Sbjct 2805972 GTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGT 2805913 Query 129008 CGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTTTTTAGTAGAAACTGC 129067 ||| || || || || ||||||||||| || |||| |||||||| || || | || Sbjct 2805912 CGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGC 2805853 Query 129068 ATCATAGAAACGAATAACGT 129087 ||| |||||||| | |||| Sbjct 2805852 ATCGTAGAAACGCTTGACGT 2805833 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875 ||||| ||||| | ||| || || |||||||||| ||||| |||||||| |||||| Sbjct 1181321 GTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACC 1181380 Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935 || ||||| || || |||||||| | |||||||||||||||||| | || | ||| ||| Sbjct 1181381 GCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCGCTTCC 1181440 Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988 ||||| ||||||| || |||||| ||||| ||||||||||| |||||||| Sbjct 1181441 AGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 1181493 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||| | || ||||| ||||||||||| | ||||| ||||| || || Sbjct 3215647 TCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACGC 3215706 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 || || || |||||||| ||||||||||||||||||||||| ||||| |||| ||||| Sbjct 3215707 ACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGCC 3215766 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 48985 || ||| |||||||| | ||| ||||| |||||||| ||||||||||| || Sbjct 3215767 TCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 3215819 >seq83 Length=912621 Score = 176 bits (194), Expect = 5e-39 Identities = 317/461 (69%), Gaps = 2/461 (0%) Strand=Plus/Minus Query 128621 CAAACGTTCAATCATCAGGTTATTAATCTGAACACCATAATCTAAATGACGAATACGGTT 128680 || ||||| | ||| || || || || || || || ||||||| ||||| | |||||| Sbjct 580201 CAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTT 580142 Query 128681 TTCATCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGAT 128740 | || ||||| ||| || || || || | | | |||||| |||||||||||| || Sbjct 580141 ACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACAT 580082 Query 128741 TGGATAGTACAGTGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGC 128800 || || |||||||||| || || || || || |||||||| ||||| ||||| || || Sbjct 580081 AGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGC 580022 Query 128801 TGTTTGGAAGTGCTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAAT 128860 || |||||||| || |||| || ||| || ||||| ||||||| | || Sbjct 580021 CGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT 579962 Query 128861 TTTTGAACCTTCTGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGAT 128920 | ||| |||||||| || ||||| ||||| || ||||| || | | Sbjct 579961 TGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAAC 579902 Query 128921 GTATTTTGTAATTGACGCAGCAGCTTCGTTAATTGAAT-TAAGACTATCACCGCCTTCAA 128979 |||||| || | || || |||| || || | |||| ||||| || | || | Sbjct 579901 GTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAG-CTATCGCCACACTCGA 579843 Query 128980 TAACCACGCATGAACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTG 129039 ||| ||||||||| || || || || ||||| || || || |||| ||| ||||| || | Sbjct 579842 TAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAG 579783 Query 129040 GCAATGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGA 129080 | || ||||| || || || || |||||||| || ||| Sbjct 579782 GTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532031945288040