Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq83 129 6e-25 seq122 107 2e-18 seq109 100 3e-16 >seq83 Length=912621 Score = 129 bits (142), Expect = 6e-25 Identities = 293/434 (68%), Gaps = 9/434 (2%) Strand=Plus/Minus Query 137487 AGTCGTTCAATCATAAGGTCATTAATTTGAACACCATAATCTAAATGACGAATACGGTTT 137546 || |||| | ||| || | || ||||| || || ||||||| ||||| | |||||| Sbjct 580200 AGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTA 580141 Query 137547 TCTTCAATACCTTTATTATTTTTAAGAACTAACAATTTTTCTAATTCAAGGTGCCACATT 137606 |||||| ||| |||||||| || ||||| || |||| | ||| | ||||||||| Sbjct 580140 CCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATA 580081 Query 137607 GGGTAATATAAAGTAGCAGAACCACCTCGAATCCCACCTTGGGAACATGATTTTACAGAT 137666 |||||| | | || || | ||| || || | || ||||| || || ||||| || | Sbjct 580080 GGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCC 580021 Query 137667 GCCAAATGG--GT-TTTCCAAAATGGAATGACACCGGTATGGACAACTTCGCCAAATCCT 137723 | | ||| || ||| | || || || ||||||||||| | |||| ||| | Sbjct 580020 GTC---TGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGG 579964 Query 137724 ATTTTAGACCCTTCAGC-CCTATACATACCGGCATTAATACCAATACCAGCTCTTTTAGA 137782 ||| ||| || | |||| || ||||| ||||| || || || | || || Sbjct 579963 ATTGGGCTGCCTAGCGCACGAATAC-GGCCAGCATTGATACCGATCCCTGCGCGTTGTGA 579905 Query 137783 AATGTATTTTACAATAGCTGCATTTGTTTCATTAATAGAATCTAAAGAATCACCGCTATC 137842 || |||||| || ||||| | || | || ||||| ||||| ||| || | || Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 579845 Query 137843 AATAACTACGCAAGAACTAAATTGACGTGTTGGGGTTCTTACACCAGACAAAATTGGTGT 137902 |||| ||||| || || ||||| || || || || | ||| |||| || ||||| || Sbjct 579844 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 579785 Query 137903 TGGTAAAGACAATT 137916 ||||| || |||| Sbjct 579784 AGGTAAGGA-AATT 579772 >seq122 Length=4874392 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 64860 TGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCC 64919 |||||| | ||||||||||||||||||||||||| ||||||||||| | |||||||||| Sbjct 814416 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 814357 Query 64920 AACTGAGCTAAGTGTGCAT 64938 |||||||||||| | |||| Sbjct 814356 AACTGAGCTAAGGGCGCAT 814338 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 55540 AGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGAC 55599 ||| || || | | | || ||||| | | ||||||| |||||| || || || | || Sbjct 1181320 AGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTAC 1181379 Query 55600 GGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATC 55659 ||||| || || |||||||| ||||| || ||||||||||| || | ||| | || || Sbjct 1181380 CGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCGCTTC 1181439 Query 55660 TAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGATTCT 55716 | || |||||| || | || ||||| || || || || || ||||| || || Sbjct 1181440 CAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAATGCT 1181496 >seq109 Length=705085 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 64857 AAATGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTA 64916 ||||||||| | ||| ||||||||||||| ||||||| ||||||||||| | ||||||| Sbjct 321825 AAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCTCTA 321766 Query 64917 TCCAACTGAGCTAAG 64931 ||||||||||||||| Sbjct 321765 TCCAACTGAGCTAAG 321751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518196228536520