Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq83 194 2e-44 seq122 178 2e-39 >seq83 Length=912621 Score = 194 bits (214), Expect = 2e-44 Identities = 222/296 (75%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 18437 AACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTCAAGTTCGCT 18496 ||||||| || |||||||| || ||||| || ||||||||| ||| || | | | || Sbjct 579909 AACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTG 579968 Query 18497 CTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTA 18556 |||||||| || || ||| ||| || |||| ||||| |||||||| || || | Sbjct 579969 GTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGA 580028 Query 18557 AATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATCCTATGTGGC 18616 |||| || || |||||||| || || || ||||| || || |||| ||| |||||||||| Sbjct 580029 AATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGC 580088 Query 18617 ATCTTGAATTCGAAAAGCTGATT-GTTCTGAAAAATAACAAAGGTGTTGATGAAAACCGC 18675 | | ||| | | |||||| ||| || |||||||||||| |||||||| | ||||| Sbjct 580089 ACTTGGAAATTG-AAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGT 580147 Query 18676 ATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAACGTTTGGT 18731 | ||||| || ||||| || |||||||||| ||||| |||| ||||| |||| Sbjct 580148 GTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAACGTCTGGT 580203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/265 (68%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 20597 CGTTAACGCACTGGAAGCAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGC 20656 ||| || || || ||||| ||||||||||| || |||||||| | || || || || Sbjct 582184 CGTCAATGCCCTCGAAGCCATTCGTTTCTACGTGAGCTTTGCTTGTTCATTCGCGTTCGC 582243 Query 20657 AGAAGATAAGAAAATGGAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACA 20716 || | || |||||||| | ||| || || || ||||| || || || || ||| Sbjct 582244 CGAGCGTGAGCTGATGGAAGGTAATGCCAAGATCATCCGTCTTATCGCACGGGACGAAGC 582303 Query 20717 ACTGCACTTGAAAGGCACACAATATATGCTGCGTAT--TTGGCAGCAAGGTAAAGATGAT 20774 |||||| ||| || ||||| ||||||| | | | | ||| ||| |||||||| Sbjct 582304 CCTGCACCTGACGGGAACACAGCATATGCTAAATCTGCTGCGAAGC--GGTGAAGATGAT 582361 Query 20775 CCTGAAATGATCGAAATTGCCAAAGAGTGTGAAGAAGA-AGCTGTTAAATTGTTCTTGGA 20833 || ||||||| || ||||| ||||| || |||| ||| || | | ||| | Sbjct 582362 CCGGAAATGAAAGAGATTGCTGCTGAGTGCGAGCAAGAGTGCT-TTGAGCTATTCAAAAA 582420 Query 20834 AGTTGCCGAACAAGAAAAAGAATGG 20858 | ||| || || |||||||| ||| Sbjct 582421 GGCTGCTGAGCAGGAAAAAGAGTGG 582445 >seq122 Length=4874392 Score = 178 bits (196), Expect = 2e-39 Identities = 286/411 (70%), Gaps = 0/411 (0%) Strand=Plus/Plus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGTGTTA 18367 |||| || ||||||||| | ||||| |||||||| || ||||||||| ||| || Sbjct 2805878 TGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTAC 2805937 Query 18368 AGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAATT 18427 |||||| ||| |||||||| || || ||||||| | || ||| | || || | Sbjct 2805938 TGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAGT 2805997 Query 18428 ATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTC 18487 | || | | || || |||||||| |||||||| ||||| || |||||| || || | Sbjct 2805998 ACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCC 2806057 Query 18488 AAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGA 18547 | ||| ||||||| ||||| || ||||| |||| || || ||||||| Sbjct 2806058 CGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGA 2806117 Query 18548 CTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATC 18607 | || || || || || || || ||||| || || || ||||| || || |||| || | Sbjct 2806118 CCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACC 2806177 Query 18608 CTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGATG 18667 | ||||||||||| ||| | |||| ||| | || ||||| || ||| || ||||| | Sbjct 2806178 CAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAG 2806237 Query 18668 AAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGT 18718 |||||| | ||||| | || || || | || | || || ||||||| Sbjct 2806238 GCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCTGATGT 2806288 Score = 147 bits (162), Expect = 3e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 125471 CCGGAAGTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACG 125530 ||| | || ||| | || |||||||||||||| || ||||| || |||| ||||||||| Sbjct 3215834 CCGCAGGTGCGCGTGGAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACG 3215775 Query 125531 CTTCAAGATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGT 125590 || |||| || || || || || || |||||||| || ||||||||||| ||||| ||| Sbjct 3215774 CTGGAAGAGGCGGTGAAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGT 3215715 Query 125591 TATGCAGTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACG 125650 ||||| || |||||||| | ||||| | ||||||||| ||||| || | || || Sbjct 3215714 TATGCCGTGCGTTTTAACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACC 3215655 Query 125651 TTTACGGAA 125659 ||||| ||| Sbjct 3215654 TTTACTGAA 3215646 Score = 125 bits (138), Expect = 8e-24 Identities = 243/353 (69%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 20067 GCGCGTTACGATACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGT 20126 ||||||| ||| |||||| |||| || || ||||| | || ||||||||| | | Sbjct 2807714 GCGCGTTTCGACCAGCAGAAATATGACATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCT 2807773 Query 20127 TTCTTCTGGCGTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTA 20186 ||||||||||| || ||||| || ||||| | || ||| || || ||| | | Sbjct 2807774 TTCTTCTGGCGCCCGGAAGAAGTGGACGTCTCGCGCGATCGTATTGACTATCAGGCGCTG 2807833 Query 20187 CCAGAACATGAAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACC 20246 ||||| || |||||||| ||||||| ||| |||||||||||| | || || | Sbjct 2807834 CCAGAGCACGAAAAACACATCTTTATCAGCAACCTGAAGTATCAGACTCTGCTGGACTCT 2807893 Query 20247 GTTCAGGGACGTGCTCCTAACACTGCTTTTATGTCCATCGTATCTGAT---GTAACACTT 20303 |||||||||| || ||| || || || | | | || ||| | | ||| Sbjct 2807894 ATTCAGGGACGCAGCCCGAACGTGGCGTTGCTGCCGCTGATCTC-GATCCCGGA--ACTG 2807950 Query 20304 GACACATGGATTCCTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACAC 20363 || || |||||| |||||||||||||| ||||| |||||| ||||| || || || Sbjct 2807951 GAAACCTGGATTGAAACCTGGGCGTTCTCCGAGACTATCCACTCGCGTTCGTACACCCAT 2808010 Query 20364 ATTATGCGCAA---CGTGTACGAAGATCCGTCCAAGATCTTTGACGAAATCGT 20413 ||||| || || ||| || | || ||| | | |||||||||| ||||| Sbjct 2808011 ATTATTCGTAATATCGT-TA--ACGACCCGGCGCTGGTCTTTGACGATATCGT 2808060 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 125481 GCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATG 125540 |||||||||| |||||||| || || ||||| || |||| ||||||| ||| | || | Sbjct 1181495 GCATTGAAGGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAG 1181436 Query 125541 CAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTC 125600 | | || | || ||||||||||| || | |||||||| || || || ||||| || | Sbjct 1181435 CGATGGAAGACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTAC 1181376 Query 125601 GTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTAC 125655 |||| || | ||||| ||||||||| ||| || |||| || || || || Sbjct 1181375 GTTTCAACTCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCAC 1181321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582690379055400