Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq122 174 2e-38 seq83 136 4e-27 >seq122 Length=4874392 Score = 174 bits (192), Expect = 2e-38 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 || || ||||| || |||||||| ||||| || | |||||||| |||||||| || || Sbjct 3215819 GAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTG 3215760 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 ||||| ||||| |||||||||||||||||||| || || ||||||||||| || || ||| Sbjct 3215759 AAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTT 3215700 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAG 102094 |||||| |||| || ||||||||||| ||||| || | |||||||| || || || Sbjct 3215699 AACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAG 3215644 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 |||||||| ||||| ||||| ||||| ||||| || ||||||| ||| || || Sbjct 1181493 ATTGAAGGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCG 1181434 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | | |||||||||||||||||| | ||||| || || || || ||||| || || Sbjct 1181433 ATGGAAGACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGT 1181374 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGT 102095 || ||||| |||||| |||||||||| || || ||| | ||||||||||| |||| Sbjct 1181373 TTCAACTCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAGC 1181314 Query 102096 TTGTAA 102101 ||||| Sbjct 1181313 ATGTAA 1181308 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22992 GGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAA 23051 ||||||| | ||| || || ||||| || | || || || ||||| || || || Sbjct 2806069 GGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAG 2806128 Query 23052 TCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCAT 23111 || || || |||||||| | || || || || || || | || || || |||||| Sbjct 2806129 TCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCAT 2806188 Query 23112 TTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATT 23171 ||||||| |||| || || || |||| || ||| || || |||| |||||| | Sbjct 2806189 CTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTG 2806248 Query 23172 CGTCATATGGATTATGGTGTTCAACTGAA 23200 ||||||||||| || || || || ||||| Sbjct 2806249 CGTCATATGGACTACGGCGTGCAGCTGAA 2806277 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 93008 TGCGGATATCGTATAATGG-TATTACCTCAGACTTCCAATCTGATGATGTGAGTTCGATT 93066 ||||| |||||||||||| ||||||||||| ||||||| ||||||||| | |||||||| Sbjct 4690151 TGCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATT 4690210 Query 93067 CTCATTATCCGCTCCAA 93083 | | | ||||||||| Sbjct 4690211 CCCGCTGCCCGCTCCAA 4690227 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 93008 TGCGGATATCGTATAATGG-TATTACCTCAGACTTCCAATCTGATGATGTGAGTTCGATT 93066 ||||| |||||||||||| ||||||||||| ||||||| ||||||||| | |||||||| Sbjct 4697302 TGCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATT 4697361 Query 93067 CTCATTATCCGCTCCAA 93083 | | | ||||||||| Sbjct 4697362 CCCGCTGCCCGCTCCAA 4697378 >seq83 Length=912621 Score = 136 bits (150), Expect = 4e-27 Identities = 290/433 (67%), Gaps = 0/433 (0%) Strand=Plus/Plus Query 22763 TCGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGG 22822 ||| |||||||| || || || || | ||||| || || || || || |||||||| Sbjct 579742 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 579801 Query 22823 TTGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTGATTCATT 22882 || || |||||||| || || || |||||||| |||| ||| || ||| || Sbjct 579802 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 579861 Query 22883 AAAGTCTATCAATAAGGCTTCCGCTTCAATTGTTGAATATATCTCTAAACGCGCTGGAAT 22942 | | |||||||| |||| | | || ||| |||| | || ||||||| || || Sbjct 579862 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 579921 Query 22943 TGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACG 23002 ||||| || | ||| |||||||| ||| || | ||||||| Sbjct 579922 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 579981 Query 23003 CCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGTTCACA 23062 |||||| ||| ||| || || | ||||| || ||||| || || ||||| || || || Sbjct 579982 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 580041 Query 23063 GGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGA 23122 ||||| | || || || || || || | ||| ||||| ||||| |||||| |||| Sbjct 580042 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 580101 Query 23123 AAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCATATGGA 23182 || | | || ||||||||||| ||||| |||| ||||| | ||||| | || Sbjct 580102 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 580161 Query 23183 TTATGGTGTTCAA 23195 ||| || || ||| Sbjct 580162 TTACGGCGTACAA 580174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534626942116320