Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq83 154 2e-32 seq122 141 1e-28 seq1959 95.1 1e-14 >seq83 Length=912621 Score = 154 bits (170), Expect = 2e-32 Identities = 337/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 || ||||| | || ||| | || ||| | |||||||| | |||||| | ||| ||| Sbjct 580233 GGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATT 580174 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || || ||||||||||| || | |||||| | |||||||| || || ||||| Sbjct 580173 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 580114 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || | | | |||| | ||| | ||||| || || || ||| || || || || ||| Sbjct 580113 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 580054 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 || | ||||||||| || |||||||| || | | || ||||| ||| |||| || Sbjct 580053 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTG---TTTGTAGAACGGG 579997 Query 140359 ATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACG-ATACAT 140417 ||| || ||||| | |||||||| | | || ||| ||||| |||| Sbjct 579996 ATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATAC-G 579938 Query 140418 TCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGTTT 140475 ||||| || | ||| || || || |||| ||| | ||||| | ||| || | Sbjct 579937 GCCAGCATTGATACCGATCCCTGCGCGTT--GTGAAACGTATTTAACGATAGCACTAGAA 579880 Query 140476 ACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGG 140535 || || ||| ||| | |||||||| | || |||| ||||| || ||||| ||| Sbjct 579879 GTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGG 579820 Query 140536 CGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTTAGAT 140595 |||||||| || ||||| || ||||| ||||| ||||| | ||||| | | | || Sbjct 579819 CGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGAC 579760 Query 140596 ACGGCATTATAGAAACG 140612 ||||||| ||| || || Sbjct 579759 ACGGCATCATAAAAGCG 579743 >seq122 Length=4874392 Score = 141 bits (156), Expect = 1e-28 Identities = 337/501 (67%), Gaps = 20/501 (4%) Strand=Plus/Minus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 |||||||||| || || | || || | ||| || | | ||| || | ||| | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || || || || | || || | ||||| | ||||| || ||||||||||| Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || |||||| |||| ||||| |||||||| || || ||| ||| || ||||| || ||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 || | |||||| ||||| || || || || | | || ||||| || |||| ||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG---CTTATAGAACGGA 2806095 Query 140359 ATAACGCCTGTATGACGAA--CTTCACCAGCGCCAATCTTAGAACCTTCAGCAC-GATAC 140415 || ||| || || ||| ||||||| ||| ||| || |||| ||| | Sbjct 2806094 ATGCAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGC 2806037 Query 140416 ATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA----TATTTGATGATTGCTTT 140471 || ||||||| || |||||||||| ||||| | || || | || || | Sbjct 2806036 -GACCGGCGTTAATGCCGATACCGGCAC----GCTGAGAAACGTACTTCACAATCGCGCT 2805982 Query 140472 GTTTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAA 140531 | || ||||| ||||| || ||||||| ||||| | ||||| || ||||| Sbjct 2805981 GGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAA 2805922 Query 140532 CTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTT 140591 |||||| ||||| || || || |||| ||||||||| || ||||| ||||||| | | Sbjct 2805921 CTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGT 2805862 Query 140592 AGATACGGCATTATAGAAACG 140612 || | |||| |||||||| Sbjct 2805861 GGAGATCGCATCGTAGAAACG 2805841 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 67174 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 67233 ||| ||||||||| ||||| ||||||||| |||||| ||||||||||||| |||||| Sbjct 217168 AATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCT 217227 Query 67234 ATCCATCTGAGCTAAAGGGCCT 67255 | ||| |||||||| |||||| Sbjct 217228 AACCAACTGAGCTATGGGGCCT 217249 >seq1959 Length=43063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 67176 TTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAT 67235 ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 8189 TTTGGTGACCCTTACTGGATTTGAACCAGTGACCTGGCGATTATGAGTCGCAAGCTCTAA 8130 Query 67236 CCATCTGAGCTAAAGGGCC 67254 || ||||||||||||||| Sbjct 8129 CC-GCTGAGCTAAAGGGCC 8112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518554600478280