Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq122 149 2e-31 >seq122 Length=4874392 Score = 149 bits (164), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||||| ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 543608 GAAGTCGACGTCAAAGTCGGGCATCGAAACACGTTCCGGGTTGAGGAAACGTTCGAACAG 543549 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 || | |||||| || ||||||||||| || || |||||| ||||| ||||| Sbjct 543548 CAGGTCAAACTCCAGCGGGTCGAGGTCGGTAATTTTCAGTGCGTAGGCCACCAGAGAACC 543489 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 ||| | || || || || || || || |||| |||| ||||| | ||| |||||| Sbjct 543488 GGCACCGGAACCACGTCCCGGCCCCACGGGCACGTCGTTATCCTTCGACCACTGGATGAA 543429 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGT 40403 || |||| |||||||||| |||||||||||||||| |||||| || Sbjct 543428 TTCCATCACGATCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATCACGT 543379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160394470074762