Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq83 145 1e-29 seq122 140 5e-28 >seq83 Length=912621 Score = 145 bits (160), Expect = 1e-29 Identities = 328/491 (67%), Gaps = 4/491 (1%) Strand=Plus/Minus Query 236197 GGACTGAATAGCGTGATGTAATCGTTATTCACAAGACGCTCAAGCATCAATCGACTGATT 236256 ||||||||||||| ||| | || || || ||||| | | ||| | | ||||| Sbjct 580233 GGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATT 580174 Query 236257 GATACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGA 236316 ||| | ||| || || ||||| | |||||| |||||||||| ||| || ||||| Sbjct 580173 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 580114 Query 236317 ACTAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCA 236376 ||||| | |||||| ||| |||||||| || |||||| || ||||| ||||| || Sbjct 580113 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 580054 Query 236377 CGTACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATT 236436 ||||| || ||||| || || ||||| || || || || |||||||| |||| || || Sbjct 580053 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATA 579994 Query 236437 ACACCAGTGTGACGAATCTCACCTGAACGAA--CGACTGCCCCTTCAGCACGAATCGCAC 236494 ||| || || | ||||| ||| | | ||| ||| |||||||| | Sbjct 579993 CAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTG--CCTAGCGCACGAATACGGC 579936 Query 236495 CGCCATTCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTT 236554 | |||| | |||||| ||||| || | || ||| | || || | ||| Sbjct 579935 CAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGG 579876 Query 236555 CATTGATTGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTG 236614 | ||||| || | || ||||| | || || || || || || || ||||| | Sbjct 579875 CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAG 579816 Query 236615 TCGGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTG 236674 |||| || || || || ||||| || || || ||||| |||| ||| ||||| || | Sbjct 579815 TCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGG 579756 Query 236675 CATTGTAGAAG 236685 ||| || ||| Sbjct 579755 CATCATAAAAG 579745 >seq122 Length=4874392 Score = 140 bits (154), Expect = 5e-28 Identities = 290/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 236265 GTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAG 236324 |||||| | |||||| | ||||| ||||||| || |||||||||||| || | ||| Sbjct 2806263 GTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGCAG 2806204 Query 236325 TTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACC 236384 |||| ||||| | ||||| || ||||| || ||||| ||||| || || || || Sbjct 2806203 GCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACGCC 2806144 Query 236385 ACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACACCAGT 236444 || ||||| || || || ||||| || || ||||| || |||| ||||| || || Sbjct 2806143 GCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATGCAGCCGGT 2806084 Query 236445 GTGACGAAT--CTCACCTGAACGAA--CGACTGCCCCTTCAGCACGAATCGCACCGCCAT 236500 ||| |||| ||||| || | | |||||| ||||| || |||| | | Sbjct 2806083 GTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCC--AGCGCACGGATGCGACCGGCGT 2806028 Query 236501 TCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGA 236560 | | |||||||| ||||||| | || ||| | ||||| | | | | || | Sbjct 2806027 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCGTTAA 2805968 Query 236561 TTGAATGCAAAG-AGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTCGGG 236619 | |||| ||| | |||||| | |||||| || || || || |||||||| |||||| Sbjct 2805967 TGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 2805909 Query 236620 GTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTG 236679 || || ||||| | |||||| || ||||| | |||| || || || | |||| | Sbjct 2805908 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGCATCG 2805849 Query 236680 TAGAA 236684 ||||| Sbjct 2805848 TAGAA 2805844 Score = 100 bits (110), Expect = 5e-16 Identities = 233/350 (67%), Gaps = 1/350 (0%) Strand=Plus/Minus Query 125179 CACACGTA-CACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCA 125237 ||| |||| || | |||||||||||| || || ||| | || | || |||| Sbjct 3821525 CACTCGTAGCATTCATCAATCGGGGTGTTGGTGCCGTAATAGGGCACGCGGCTGTAGCTG 3821466 Query 125238 TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAA 125297 |||||||| ||| ||| || | || | ||| | | ||||||||| |||| | || Sbjct 3821465 TAATCCCAGACGTCCTCCAGTGCCTTCAGGTTATGCTGGATATTCGGGTACTCGCCGTAG 3821406 Query 125298 CAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAAT 125357 ||||| ||||| ||||| || || || | |||||||| || ||||| || | Sbjct 3821405 CAGATAAAACCGCCGTTGGCGATCGGCGGATAGCCCGCTTCAAAGTCGATTTTGTCGTAC 3821346 Query 125358 GGGTTCACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTG 125417 || || || || || ||||| | ||| || ||| ||||| || ||||||| || Sbjct 3821345 GGATTAACCTTTTTCTCAACGTCGAGGTGGAAGCTGTTGGTGTAGTAACCTTTGTCGGTG 3821286 Query 125418 ATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGAT 125477 | || | | || || ||| | |||||| || ||||| || || || || | Sbjct 3821285 ACGCCCGGCACCACGCCAAATTCGGCGGCGTCGAGGCGGCAGAAGCGGTCGCACAGGTTT 3821226 Query 125478 TCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCA 125527 || || || || |||||||| ||||| |||||| | ||| || ||||| Sbjct 3821225 TCGCTCGGCGTGCTGTACAGGCTGAAGCCGTAGTCGGTCTCCTCCTTCCA 3821176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793691459015040