Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq122 107 2e-18 >seq122 Length=4874392 Score = 107 bits (118), Expect = 2e-18 Identities = 292/447 (65%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 143911 CATAAGGTCGTTCATCTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACC 143970 ||| || | ||||| ||| | |||||||||||||| || | ||||| | || || || Sbjct 2806287 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 2806228 Query 143971 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 144030 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 2806227 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 2806168 Query 144031 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 144090 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 2806167 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 2806108 Query 144091 TTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTC 144150 || |||| ||||| ||||| || |||| || || || | || Sbjct 2806107 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 2806048 Query 144151 AGCACGAATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTAT 144210 ||||| || ||| |||| || || ||||||||||| | ||||| ||| | | || Sbjct 2806047 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 2805988 Query 144211 TGAGTTAGCAGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGA 144270 | | | | || |||||| || | || |||||| ||||| | || || || Sbjct 2805987 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 2805928 Query 144271 ACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTG 144330 || || || || || || || || | || | |||||| || || || | |||| || Sbjct 2805927 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTT 2805868 Query 144331 ACGGGTACTTACAGCATCATAAAAACG 144357 | ||| | ||||| || ||||| Sbjct 2805867 AAAGGTGGAGATCGCATCGTAGAAACG 2805841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545515689596760