Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028872.1 Length=86252 Score E Sequences producing significant alignments: (Bits) Value seq122 98.7 5e-16 >seq122 Length=4874392 Score = 98.7 bits (108), Expect = 5e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 85259 AAGGTACTGGATGAGCATATCGGACTTATCTATGGTGACTCTATCACGCTGGAACGTGCA 85318 ||||| ||||| ||| | || || ||||| || ||||| || || || || ||||| Sbjct 3983501 AAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCC 3983442 Query 85319 AACGAAATCCTGAAGCGTCTGTATGAAATGGGTTTTGCAAGCTCTAACGTAGTGTTTGGT 85378 || | ||||||| |||||| | | | || ||||| ||| || || ||||| || Sbjct 3983441 AATCAGATCCTGAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTTCGGC 3983382 Query 85379 GTAGGCTCTTACACTTACCAGTACATGACTCGTGACACCTTTGCATTTGCTGTCAAAGCA 85438 || || ||||| || |||||||||| || ||||||||||||| || || | ||||| Sbjct 3983381 GTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCG 3983322 Query 85439 AC 85440 || Sbjct 3983321 AC 3983320 Score = 93.3 bits (102), Expect = 2e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 26827 ATGCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTCG 26886 |||| ||||||| ||| |||||||||||| ||| ||||||| ||| || ||||||||| Sbjct 814338 ATGCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCG 814397 Query 26887 AATCCTGTAGGGTGTGCCAAT 26907 |||||||||||| || ||||| Sbjct 814398 AATCCTGTAGGGCGTACCAAT 814418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 275860541871259