Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq122 95.1 8e-15 seq109 86.0 4e-12 >seq122 Length=4874392 Score = 95.1 bits (104), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 96676 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 96735 ||| | ||| | ||| || ||||| || | ||||| || || || |||||||| ||||| Sbjct 1174891 CGGGATGTTAGCTTTAATCAGGCCGGTAATGACATCGACTGACGGACGCTGCGTTGCCAG 1174832 Query 96736 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 96795 || || |||||||| ||||| ||||| ||||| || | ||| | || | || || Sbjct 1174831 CACCAGGTGAATACCCGCTGCACGCGCTTTCTGCGCCAGGCGAGCGATCAGCTCTTCCAC 1174772 Query 96796 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 96855 | |||| | || ||| || ||||| || | ||||||||||| ||||||||||| Sbjct 1174771 CTTTTTCCCGA---CGGTCATGATCAGGTCGGCAAATTCGTCGACCATCACCACGATGTA 1174715 Query 96856 GGG 96858 || Sbjct 1174714 CGG 1174712 >seq109 Length=705085 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/189 (70%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 96676 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 96735 ||| | ||||| || || | || |||| |||||||| || |||||||| |||||||| Sbjct 131215 CGGGATGTTGGCCTTAATCAAACCCGTGATGACATCCACCGATGGCCGCTGTGTCGCCAG 131274 Query 96736 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 96795 || | || |||||||| || || || || || |||| ||| | || | || || Sbjct 131275 AACCAAGTGTATACCGGCCGCACGTGCTTTTTGAGCGAGACGGGCGATTAGCTCTTCAAC 131334 Query 96796 TTCTTTCTTGTAGCCGC--CCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 96853 || ||| | || | ||||||| ||||| || | ||||||||||| || ||||| Sbjct 131335 TTTTTT-----ACCCACTGCCATCATTAGGTCGGCAAATTCGTCGACCATCACGACGATA 131389 Query 96854 TAGGGGAGT 96862 || || ||| Sbjct 131390 TAAGGCAGT 131398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351208390107423