Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq122 136 2e-27 >seq122 Length=4874392 Score = 136 bits (150), Expect = 2e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 51105 TGCTGTATGAGCATTTCGGCGGTAAGAAGAACGCTGGGGGGTTCATTGAGCTTGACCCGC 51164 |||||| ||| |||||||| | | || || |||| | || | ||| ||||||| Sbjct 3983545 TGCTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGGGCTACAAGGTGCTGGACCCGC 3983486 Query 51165 ACGTGGGTGTGATCTACGGCGACTCGATCACGCTTGAGCGCGCCGAGCGCATCACCGCG- 51223 |||||||| ||||||||||||||||||| || || ||||| ||| | | ||| | | | Sbjct 3983485 ACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCCAATCAGATC-CTGAGT 3983427 Query 51224 CGTATGGAGCGGCTGGGTTATGCGTCGTCCAACGTGGTGTTTGGGGTCGGGTCGTTCACG 51283 ||| ||||| || | ||| ||| |||||||| || |||||||| | ||| Sbjct 3983426 CGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTTCGGCGTCGGGTCTTATACG 3983367 Query 51284 TACCAGTACAACACCCGCGACACGTTCGGGTCCGCGATGAAAGCGACGT 51332 |||||||||||||| || ||||| || || | ||| ||||||||||||| Sbjct 3983366 TACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCGACGT 3983318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243923779800376