Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq122 143 3e-29 >seq122 Length=4874392 Score = 143 bits (158), Expect = 3e-29 Identities = 300/447 (67%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 142849 CATAAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCAACGCC 142908 ||| || | ||||| ||| | ||||||||||||||||| | ||||| | |||||||| Sbjct 2806287 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 2806228 Query 142909 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 142968 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 2806227 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 2806168 Query 142969 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACTGCAGTCTGGAAATG 143028 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 2806167 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 2806108 Query 143029 CTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATACCAATACGAGAACCTTC 143088 ||| |||| ||||| ||||| || ||||||| | || | || Sbjct 2806107 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 2806048 Query 143089 AGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATATACTCGATTAT 143148 ||||| || ||| |||| || || ||||| ||||| | ||||| |||| | || Sbjct 2806047 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 2805988 Query 143149 TGAGTTAGCAGTTTTATTAATTGATTTCAGCGAGTCACCTGCTTCAATAACAACGCAAGA 143208 | | | | || ||||| || | || ||| || ||||| | ||||| || Sbjct 2805987 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 2805928 Query 143209 ACTAAACTGACGGGTCGGGGTACGAGCACCAGCCATAATAGGAGTAGGCAATGAAATCTG 143268 || ||||| || |||||||| || | || | |||||| || || |||| ||||||| Sbjct 2805927 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTT 2805868 Query 143269 ACGGGTGCTAACAGCATCATAAAAACG 143295 | |||| | ||||| || ||||| Sbjct 2805867 AAAGGTGGAGATCGCATCGTAGAAACG 2805841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545342903124840