Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq83 93.3 4e-14 seq122 84.2 2e-11 >seq83 Length=912621 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27047 GGGGAGGTCGGTTCGATTCCGACATGTCCCTCCAATACGCCTTCTTAGCTCAGTTGGTAG 27106 |||| | |||||||| |||| ||| ||| ||| | || | |||||||||||||||| Sbjct 700868 GGGGTCGGCGGTTCGAATCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAG 700927 Query 27107 AGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACA 27150 ||| ||||||| |||||||| ||||| |||||||||||| || Sbjct 700928 AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCA 700971 >seq122 Length=4874392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27047 GGGGAGGTCGGTTCGATTCCGACATGTCCCTCCAATACGCCTTCTTAGCTCAGTTGGTAG 27106 |||| | |||||||| ||| ||| ||| ||| || | |||||||||||||||| Sbjct 980162 GGGGTCGGCGGTTCGAGCCCGTCATCACCCACCATATCGGGTCGTTAGCTCAGTTGGTAG 980221 Query 27107 AGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACA 27150 ||| ||||||| |||||||| ||||| |||||||||||| || Sbjct 980222 AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCA 980265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27047 GGGGAGGTCGGTTCGATTCCGACATGTCCCTCCAATACGCCTTCTTAGCTCAGTTGGTAG 27106 |||| | |||||||| ||| ||| ||| ||| || | |||||||||||||||| Sbjct 980471 GGGGTCGGCGGTTCGAGCCCGTCATCACCCACCATATCGGGTCGTTAGCTCAGTTGGTAG 980530 Query 27107 AGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACA 27150 ||| ||||||| |||||||| ||||| |||||||||||| || Sbjct 980531 AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCA 980574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27047 GGGGAGGTCGGTTCGATTCCGACATGTCCCTCCAATACGCCTTCTTAGCTCAGTTGGTAG 27106 |||| | |||||||| ||| ||| ||| ||| || | |||||||||||||||| Sbjct 3034624 GGGGTCGGCGGTTCGAGCCCGTCATCACCCACCATATCGGGTCGTTAGCTCAGTTGGTAG 3034683 Query 27107 AGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACA 27150 ||| ||||||| |||||||| ||||| |||||||||||| || Sbjct 3034684 AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCA 3034727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519786504028080