Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028894.1 Length=170336 Score E Sequences producing significant alignments: (Bits) Value seq83 141 1e-28 seq122 111 2e-19 >seq83 Length=912621 Score = 141 bits (156), Expect = 1e-28 Identities = 312/463 (67%), Gaps = 6/463 (1%) Strand=Plus/Minus Query 140746 CCAGTCGTTCCATCATCAGGTTATTCAACTGGACACCATAGTCCATATGCCTGATACGGT 140805 |||| |||| ||| || || || | || || || || || | || | || ||||| Sbjct 580202 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 580143 Query 140806 TTTCTTCAACGCCTTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAA 140865 | ||||||| || ||| || ||||| || | ||| |||||| |||||| ||||| | Sbjct 580142 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 580083 Query 140866 TAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAG 140925 |||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 580082 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 580023 Query 140926 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCGA 140985 |||| ||||| ||||| ||||||| ||| ||| ||||| ||||||| || || Sbjct 580022 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 579963 Query 140986 TTTTCGAACCTTCAGCACGAATCATGCCAACGTTGATACCGATACCTGCACGCTTACTGA 141045 || ||| |||||||| |||| | ||||||||||| |||| ||| | ||| Sbjct 579962 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTG--CGCGTTGTGA 579905 Query 141046 TA--TATTCGATGATTGAATTAGCAGTCTTATTGATTGACTTCAGGGAGTCAGCCGC-TT 141102 | |||| | ||| | | ||| ||| ||||| || | | | || ||| | | Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATC-GCCACACT 579846 Query 141103 CGATAACCACGCAGGAACTGAACTGTCTTGTAGGTGTTCTGGCGCCCGCCATGATAGGTG 141162 |||||| |||||| || ||||| || | || || || | | || |||||||| || | Sbjct 579845 CGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCG 579786 Query 141163 TGGGCAACGAAACCTGTCGTGTAGATACTGCATCATAAAAACG 141205 | || || |||| | || || || ||||||||||| || Sbjct 579785 TAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 579743 >seq122 Length=4874392 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 140715 GGACTAAACAGAGTGATGTAATCATTCTTGGCCAGTCGTTCCATCATCAGGTTATTCAAC 140774 || || |||||||| || | ||| ||| ||| || | |||||| || |||| | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 140775 TGGACACCATAGTCCATATGCCTGATACGGTTTTCTTCAACGCCTTTGTTGTTCTTCAGA 140834 || || || ||||||||||| | | ||||| |||||||||| |||||||||||| Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 140835 ACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140894 || || | |||| ||||||| |||||| || || || | || || || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 140895 CGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 140953 || | || || || || || || || || || || ||||| || || |||||||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT 2806093 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 52860 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52919 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 1707341 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 1707282 Query 52920 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAGCCCG 52977 || | ||| ||||| |||| |||||||| || ||||||||||| | || || Sbjct 1707281 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 1707224 Query 52978 TAACACATAACGGGGATATTATAATTATCAACCACT 53013 ||||| | || || |||| || ||| |||||| Sbjct 1707223 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 1707188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544904537446080