Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq122 838 0.0 >seq122 Length=4874392 Score = 838 bits (928), Expect = 0.0 Identities = 1246/1749 (71%), Gaps = 55/1749 (3%) Strand=Plus/Minus Query 5012 CAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCAT 5071 ||||||||| || ||||| | |||| ||||||| ||||||||| |||| | ||| Sbjct 201463 CAGGCCGATGTTCTTACGGTGCTCGGCCAGGCGGTCGATGCCGTTCACGATCTCGACCAT 201404 Query 5072 GTTGATGGTGTCGATTTCGACCAGCTCCTTACCGT-CCATCGTCAGCCGGAAATAGGTGC 5130 ||||| ||||||||| || | |||| | || |||| ||| | ||||| | | ||||||| Sbjct 201403 GTTGACGGTGTCGATCTCAATCAGCGCTTTGCCGTTCCAGC-TCAGCTTGTAGTAGGTGC 201345 Query 5131 AGACCACGGAGATTTTCGACTCGGTGTCTTCTCCCTGTTTACCCTCGCCGGTGTCGATTT 5190 | || |||||| | ||| | || || ||||| || | ||||||| ||||| | Sbjct 201344 ATTTGGTGGTGATTTTGGTTTCGTTCTCCTCACCCTGCTTGCTCTCGCCGAAGTCGAACT 201285 Query 5191 CTTTCTGACGTCCACGCATGACCACCTCGACGGCCACCGTTTCGCCGGTATCGTCGCGCT 5250 | || || |||| ||||||| || || | || ||| |||| ||||| |||| Sbjct 201284 GCTGATGCTTGCCGCGCAGCTCCACCTCCACCGCGATGGTCTCGTCGGTGTCGTCACGCT 201225 Query 5251 GGTAAGAGCCTGCAAAACGAATCGGCAC---GGCATCCACACCGGTTGCGGCGTAAAGCT 5307 |||| || || ||| || | |||||| ||| |||| || | || ||| Sbjct 201224 GGTAGGAACCCATAAAGCGCAGCGGCACCGTGGCG-CCACCCCACTGGCTC-----AGCA 201171 Query 5308 CCCAGATAACCGAATCCGGGAAGCCACCCAGCGACCACTCCATTGACAGCGCATCGTCAT 5367 | | | | ||| |||| || | | |||||||| ||||||||| || | Sbjct 201170 CGCGG-TCGTCGAGGCCGG--AG------ATGGTCCACTCCAGATCCAGCGCATCATCTT 201120 Query 5368 CAAGGCCGAGGTCTACCGGTGCGCTGCCGTTCATCCCCGCACCGCGATAGTTTTCGAGCT 5427 | ||||| || | | || ||||||||| || | ||||| || ||||||| Sbjct 201119 CCAGGCCATTATCGATATGCGCCACGCCGTTCATGCCGCCGCCGCGGTAAGGGTCGAGCT 201060 Query 5428 TACGGGTCAGTTTTGGCAGCGTGACGGACTTTGCAACGCCCTGATAGCTGTAGCCGTTCA 5487 | || | ||| || |||||||| | || | | || ||||||||||||| | | | Sbjct 201059 TGCGCGCCAGCTTCGGCAGCGTCAGTGAGGTCACCACACCCTGATAGCTGTTGGCATCGT 201000 Query 5488 GAAAGACGTTCATTAACTTGAGTTTGCGCGGCATTGCCATCGGTCAGGCTCCTTAATTGC 5547 ||| | |||| | || ||||| |||| |||||| | ||||||| || Sbjct 200999 TAAACAAATTCAGGTATTTCAGTTTCTTAGGCAGTGCCATGAGGGTTTCTCCTTA---GC 200943 Query 5548 TTTTAACCGAAGTGACCAGATTTGCCAGGTATTTATCGGTAATACGCTGGCGCAGGGTCA 5607 | || || |||| | | | || |||||||| | |||||||| ||||| |||||||||| Sbjct 200942 TGTTCACAGAAGCGGCGAAGTTCGCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCA 200883 Query 5608 GGTTTTCGAGAGGAGGCACCGGGGTATAGTCATAGTCGATATACAGTTTTCCGGCCTTGA 5667 | | ||| || || ||||||||||||||||| |||||||||||||| || ||||| || | Sbjct 200882 GATCTTCCAGCGGCGGCACCGGGGTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCA 200823 Query 5668 GGGTTTCCGCATCGTTGGATTCTTCGCTGAACCAGCAGGTCGCATCCACGATATAGCCGT 5727 || | ||| ||||| |||| | |||||||| | || ||| | ||| ||| Sbjct 200822 GGCTCTCCTGGCTGTTGGCGCTTTCGTCGTACCAGCAGTTGGCGCCCAGCAGATAACCGG 200763 Query 5728 TTGTTTTCAGCTCACGGAATTTGGCATTGATGCCGTCAACGATGTCGCGAATCAGCGTTG 5787 | ||||||||||||| ||||| ||||| ||| | | |||||||| | |||||| | Sbjct 200762 CGTTGATCAGCTCACGGAACTTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCG 200703 Query 5788 CGGTGATGGGCTTGTCCACCGCCCACATATGCGCCTCAGCCATCGTGTCGGCCAGCACCT 5847 || | |||||||| |||||||||||||| || ||||| |||||||| | ||||| Sbjct 200702 GCGTCAGCGGCTTGTCGTTGGCCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCT 200643 Query 5848 GCGCGGTGCGGGTGTAGTTTTCAAAGAGGAACAGCGGGTCATCAGAGCAGGTACGGTTAC 5907 |||| | ||||||||||||||||||| ||||||||||||||| ||||| ||||| | Sbjct 200642 GCGCCGAGCGGGTGTAGTTTTCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGC 200583 Query 5908 CCCAGAATCGGAAACCGTCGCGGCGAATCAGCGTAGTGACGCCTGACTCGTTAAGCAGGT 5967 ||||||| ||||||||||| ||| |||||||| ||||||| | || || ||||| | Sbjct 200582 CCCAGAAGCGGAAACCGTCTTTGCGGATCAGCGTGGTGACGCTGGCTTCATTCAGCAGAT 200523 Query 5968 CAGCATCGGTGCCGGACTCCTGCAAATCCCAGAATACAGATGCGCTGATGCCGGTAACAC 6027 | |||||||| || || ||||| ||||||||||| || ||| | |||||| || | Sbjct 200522 CGGCATCGGTCCCCACCTGCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGC 200463 Query 6028 CGTTTACCCCGACGTTGGACAGCGTTTTATGCCAGCC-CTGCTCCTGGTCGATTTTAGCG 6086 |||| || |||||||| ||||| |||||||||||||| ||| || | |||||||| ||| Sbjct 200462 CGTTGACGCCGACGTTCGACAGGGTTTTATGCCAGCCGCTG-TCGTTATCGATTTTGGCG 200404 Query 6087 CGCAGACCCAGCGCACGGGCGGTGGCATACGCGGTGGCGGTGGTACTGTTGACCGTATCC 6146 ||||| || || || |||||||||||||| || || | | | ||| | || || | | Sbjct 200403 CGCAGGCCGAGGGCGCGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTC 200344 Query 6147 CATGCGAGGAAATCCGGCCAGATGACCATCAGCTCACGCTGGCTGAAATTCTGGCGGTAG 6206 || |||| || || |||||||| ||||||||||| ||||||||||| || | ||| || Sbjct 200343 CAGGCGACAAAGTCGGGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATA- 200285 Query 6207 GCTT--TCACCTCGGAAATGGTTTTACAGCCCCATGCGCTGATATACCCGAAAGCGCGCA 6264 ||| | | ||| | ||||||||||| | || |||||| ||||| ||||||| Sbjct 200284 -CTTGAGCGCATCGCTTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCA 200226 Query 6265 ACTTCTGACACACTGATGCCAGTGCAACTGCCACCTCTTTGGTGTCCAGTCCCGGTACGC 6324 || ||| || | || ||||| || ||||| || | ||||| ||||| |||| Sbjct 200225 GCTGCTGGCAGATTGCCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGC 200166 Query 6325 CGAGAATACGCGGTTTAACACC--GGTTACCGACTCCGCCGCCAGCAGGGCTTTCAGTCC 6382 ||||||||||||| ||||| || ||| | | || |||||| ||||| ||||||| || Sbjct 200165 CGAGAATACGCGGCTTAACGCCAAGGT--CGGTCTGCGCCGCGAGCAGCGCTTTCATCCC 200108 Query 6383 GGTGTACTGACCGTTTTCGTCGGTGGTGCCGATGATATTGGAAACGGTCTGCGCGAGTTT 6442 |||||| | ||||| | ||| || ||||||||||||| ||| | Sbjct 200107 GGTGTAGCGGCCGTTAGCATCGCTGCCGCCGATGATATTG--------CTG-------GT 200063 Query 6443 CGTTTCCTCGTCGTCGCCGGTGCCGTCTTCCACACGCACAACAACGGTGACCGGTTTTGA 6502 ||| || | ||||| | || || || || ||||| || || || ||||| || Sbjct 200062 GGTTGCCGCTTCGTCTTC---ACCCTCCTCAACGCGCACCACCACCGTTACCGGCTTGCT 200006 Query 6503 CTGGTCGGCGATGGCCTGCAACGCTGCCGCCAGCGTGCCTTTTTTACCGGCCTTTGCAAT 6562 ||||||||| || ||||||| |||| |||||||||||| | |||||| || | | Sbjct 200005 CTGGTCGGCAATCGCCTGCAGCGCTTTCGCCAGCGTGCCGCTGACACCGGCTTTCCCCAC 199946 Query 6563 TGCGCTCTGCACATTGGTAATCAGCACCGGTTTATTGAGGGGGAAGATTTCCGCATCCGC 6622 || |||||| | ||||||||||||||| | ||||| ||||| | ||||| || Sbjct 199945 CGCCGCCTGCACGTCGGTAATCAGCACCGGCGTGTTGAGCGGGAATACGGTGGCATCAGC 199886 Query 6623 AT-CGCTGGCCGTGCAGACCAAGCCGACAATGGCAGTGGATACGGTGGAAATGACGCGGG 6681 || |||| || |||||||||| ||||||||| | ||||||||| |||||||| ||||| Sbjct 199885 ATCCGCT-GCAGTGCAGACCATGCCGACAATAGAAGTGGATACCGTGGAAATACTGCGGG 199827 Query 6682 TGCCGTCGTTAATCTCCAGCACCTGCACGCCGTGATGATAGTCACTCATCCGT-TTA-AC 6739 | ||||| || || || | || | |||||||| ||||| | | |||| | ||| || Sbjct 199826 TTCCGTCATTGATTTCAACGACGCGTACGCCGTGGTGATAATTAGCCATCTTTATTACAC 199767 Query 6740 TCCGTGGTT 6748 ||||||||| Sbjct 199766 TCCGTGGTT 199758 Score = 545 bits (604), Expect = 5e-151 Identities = 1141/1680 (68%), Gaps = 30/1680 (2%) Strand=Plus/Minus Query 10581 ATGTCCCGGGTAATGTTCAGGCCAATAAGGTGGCGGCTTGCAGGTTTGGCATCAGCAATC 10640 || ||| ||||||| ||||||| |||| ||||| || ||||||| ||||| | ||| Sbjct 198250 ATATCCTGGGTAATCGTCAGGCCGGTAAGATGGCGACTGACAGGTTTTGCATCGCCGATC 198191 Query 10641 AGCCGTTCCATTTCCTGATACATTGCCTCTGTGATACCGCTTTCCAGTACACCAATATCA 10700 ||||| |||||||| | | |||| || || || || |||||| || || |||||| Sbjct 198190 AGCCGCTCCATTTCGTTAAACATCGCTTCATCAATGCCTGATTCCAGCACGCCGATATCA 198131 Query 10701 AGCCGGAAGGTGCCTGGCGGGTCACTGTTTTCCCACCACTCCGTCACGTTAATGAGATAG 10760 || ||||||||||| ||||| || ||| ||| ||||||||| |||||||| | ||| Sbjct 198130 AGGCGGAAGGTGCCGGGCGGTTCGCTGGTTTGCCACCACTCATGGACGTTAATCACATAC 198071 Query 10761 CCGAGCGGCTCCACCACACGCCGGATTGCGCCGATAGTGCCTTTATGACAGTGGATGAAA 10820 || |||||||||||||| || ||||| || ||| ||||| || | | |||||| || Sbjct 198070 CCCAGCGGCTCCACCACCCGGCGGATCGCCGAGATGGTGCCCTTGCGGCGGTGGATAAAC 198011 Query 10821 TAGGCATCGCGGATAACGGCACGTTTGGTCGCTTCCGGCCACTTTTCATCCCACCTGTCG 10880 | | || || || ||||| ||||| |||||||||||| | |||||| | || Sbjct 198010 TGCGAGGCGGCGACCACCGCACGCCTGGTCTCTTCCGGCCACTCCTGATCCCAGCGATCC 197951 Query 10881 ACCGAAAACGCCCACGCCAGCCACGGCAGCAGATTTGCCGGGCAGGTGTCCGGGTTCCAC 10940 ||||| | ||||| || || | || ||||| |||||| || | |||||||||| Sbjct 197950 ACCGACCAGGCCCAGGCGAGATAGGGGAGCAGCGGCAGCGGGCAAGTCTGCGGGTTCCAC 197891 Query 10941 AGTTCACGAATCCTGACCGGCGTTTTTTCAATTTCCGCACAGGCTTTTGCGGCGGCAACT 11000 || || | | |||||| | | | ||||||||||| |||||||| || Sbjct 197890 AGGGTGCGCAGCGGCACCGGCAGCTGCTGCAGGCGCGCACAGGCTTCGGCGGCGGCCACC 197831 Query 11001 TCAAGCGGTGATGAGCCGGTCGGCAGCAGTCGCGAATCACTCATCCGAGCCTCCGGTCAC 11060 || ||| |||| |||||| |||||||| || ||||||||| || ||||| | | Sbjct 197830 TCGAGCTGTGACGAGCCGACGGGCAGCAGGCG---GTCACTCATCGGAACCTCCTACCGC 197774 Query 11061 GA-CGCGGTATTCAGTACAGAAAGACGCCTGCGTACTGTTGAGCACAATGTCGGC--CAG 11117 || | ||| | || ||| | | |||||| || | | ||||| | || || ||| Sbjct 197773 GATCTGCGTA-GCGGTGCAGTACGCCGCCTGGGTTTTATCCAGCACCACATCAGCAGCAG 197715 Query 11118 TGGTGCGGCCAGCTCGACACGCTGCACGCCTTCCACATGCAAAGCGGCATAAATGGCAGA 11177 | ||| |||||||| || ||||| || || || || |||| || ||||| | || || Sbjct 197714 -GCTGC-GCCAGCTCTACGCGCTGGACACCCTCGACGTGCAGCGCCGCATACAGCGCTGA 197657 Query 11178 CAGACGGATGTCGCGCCCCAGCCGGTGCTGTGCCGTGATATACGCTTCCAGCTTTTTCAC 11237 | ||||| |||||||||||||| ||| || | | | | || ||||| | Sbjct 197656 CCTGCGGATATCGCGCCCCAGCCGCGACTGGGCGTTTACAAAGGCCGCCAGCCGGGCTGC 197597 Query 11238 AGCGGCAGCGCGAATGGGTTCGCTTTCGGGACCAGGGTAAAGGTAAAGCGTGGCGTTTAT 11297 | ||| ||||| || || || || || || || || || | |||||||| | | Sbjct 197596 CGAGGCGGCGCGGATCGGCTCCGCCTCCGGCCCGGGATAGAGAAACAGCGTGGCCTCAAC 197537 Query 11298 CTGATATTCAACGATGGCGGCAGACTGCACGGTCACGCGGTCGGCCACCGGCCTGACGTC 11357 | || || ||||| || ||||||||| | ||||| || |||||||| | || || Sbjct 197536 GCGGTACTCGACGATTTTTGCCGACTGCACGCTGACGCGATCCGCCACCGGGCGCACCTC 197477 Query 11358 CTCACCATTAAG---GGCGTTACGCACCACAGCCAGCAGGTCTTCGGATGCGACGCCGTT 11414 ||| |||| || ||||| || || |||||||| || || || ||||| Sbjct 197476 CTCGTCATTCAGCGCCGCGTT---GACGACGGCCAGCAGTTCAGCGCTGGCCTCGCCGCG 197420 Query 11415 ATTTTCACGTGACAGCACAGAGATGGTGACACAGGCAGGAGACGGACTGGTGACAGAAAT 11474 |||||| |||||||| | ||||||||| ||| || ||||| ||| || | | | Sbjct 197419 CCCTTCACGCGACAGCACGGTGATGGTGACCACGGCCGGGGACGGGCTGATGGCGGTGAC 197360 Query 11475 ATCGGCGACACGCCCGTCAGCACTGCGACCATGATACTGATAGGCTCCCACTGACCCGGC 11534 ||| || || || || || || ||||| | ||||| | |||||| || | | ||| || Sbjct 197359 ATCCGCCACGCGACCATCGGCGCTGCGGGCGTGATATTCATAGGCCCCGCCCGGCCCCGC 197300 Query 11535 GACGCTTAAGCCCTCAAAAGCCTGCTGAATACGCAGACGATAATCGGTGTCAGATTCCAT 11594 ||||| | |||||||| ||||| || |||||||| | ||| ||| || | Sbjct 197299 CACGCTCAGCCCCTCAAAGGCCTGGGCGATGCGCAGACGGAAGTCGTCGTCGCTCTCAAG 197240 Query 11595 CACTGCCGGTGTCGGCGGAATGGTCGAATCATCTGCCGGGGTGATAATCAGGCGCGTGGT 11654 | ||||| |||||||| | || | |||||| || | | | ||| || ||| Sbjct 197239 CCGCGCCGGGGTCGGCGGCAGCGTGCTGTTATCTGCGGGTTTCAGCACCAGACGGGTGAC 197180 Query 11655 GTTGTAATTGGCACCAATTACATCAAGGTCATTACCGGCAGCACAGGCCAGCATCACCGC 11714 | || ||| | |||| || || || | ||| || | |||| ||| || Sbjct 197179 GCCGTTGTTGACCCCAAGCTGGTCGAGATCGCTGCCGCTGGCGAATGCCACCATGGTGGC 197120 Query 11715 CCGTGCGGCCTCATTCACACGCTGACGCCAGATAAGCTCACGATAAGCATTTTCCTCCAG 11774 || || || || | ||||| ||| ||| | ||| || || || || |||||||| Sbjct 197119 TTTCGCCGCTTCGTTAATGCGCTGGCGCAGGATCACCTCGCGGTAGGCGTTCTCCTCCAG 197060 Query 11775 CAGTTTGACGAGAGGCTCAGATTCCAGCGTCAGGGTACGGGCGACCGCCTCCTGCTGGTC 11834 ||| ||||||| ||||| || |||| || | ||| ||||| | ||||||||||| || Sbjct 197059 CAGCTTGACGATCGGCTCCGACGCCAGGGTTAAGGTGCGGGCTATCGCCTCCTGCTTATC 197000 Query 11835 TTCCGGGTAAAGGGAAATCAGTGTCGC-CTTGCG-TTCAGCGAGAATGGTTTCAAAGTCC 11892 | || || | | |||||| | ||| ||||| | | || | | ||| ||||| ||| Sbjct 196999 GGCGGGATAGCGCGCAATCAGCG-CGCTTTTGCGCTGCTGC-AACAGGGTCTCAAAATCC 196942 Query 11893 AGCTCCTCGACCACATCCGGTGCGGGTAGCTGGTTCAGGTCGATAATCGGCAT-GGTTTC 11951 ||| | ||||| | | ||| ||||||| ||| | | || || | | ||| ||| | Sbjct 196941 AGCGCTTCGACGATGTTCGGCGCGGGTAACTGACTTAAATCAATCGTGGCCATAGGTGTT 196882 Query 11952 AACTCACAGGGATGGTTAACGAAAGTGGCTGGCCGGTGTCGTTGTGCTGGCCGGTTAACG 12011 ||||||| || |||| || |||| || ||| | | |||| | |||| ||| || Sbjct 196881 AACTCACTGGAATGGATAGGGAAAATG--TGGAC----TGGTTGCGGGTGCCGCTTAGCG 196828 Query 12012 TGACCGTCATTCGCCCGTCAAAACTGCGCGCCG-TAGTGACGGATGAC-AGGGTGACGCG 12069 ||| ||| | |||||||| | | || | ||| | | || | || |||| ||| Sbjct 196827 CTACCTCCATGCTGCCGTCAAACC--CCGGCTGATAGCGGATGCTGTCGAGCGTGATGCG 196770 Query 12070 GGGTTCCCATTTCAGCACCGCCATGTAACAGGCGACCTTAATCTGCAACTCAAGCGCCGG 12129 || ||||| ||||| ||||||||| ||||| | ||||||||| |||| | Sbjct 196769 CGGCTCCCAGCGCAGCAGCGCCATGTAGCAGGCCGACATAATCTGCAGGCGCAGCGTCTC 196710 Query 12130 GGTCTGCGGCTGGTCAATCATTGATGCCAGCAACGAGCCGTAATCACGACGCATCACCCG 12189 | ||||||||||||| | || | | ||||| ||||||||| ||||| ||||||||||| Sbjct 196709 GTTCTGCGGCTGGTCGAGCAGCGCCGACAGCAGCGAGCCGTAGTCACGGCGCATCACCCG 196650 Query 12190 TGAGCCGACCGGTGTGCGCAGGATATCGCCGATACTCTGGCTGATATGCTCAAGGTCAGT 12249 ||||| ||| || ||||||| |||| | ||||| |||||| || | ||||| Sbjct 196649 CGAGCCCTGCGGGGTCAGCAGGATGTCGCGCACCGACTGGCGGATATGGTCGATATCAGT 196590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104430632589822