Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq122 123 3e-23 >seq122 Length=4874392 Score = 123 bits (136), Expect = 3e-23 Identities = 324/492 (66%), Gaps = 2/492 (0%) Strand=Plus/Minus Query 143043 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGTCGTTCCATCATCAGGTTATTAAGC 143102 || || |||||||| || | ||| ||| ||| || | |||||| || || ||| Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 143103 TGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 143162 || || || ||||||||||| | | ||||| |||||||||| |||||||||||| Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 143163 ACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCGCCGCCA 143222 || || | |||| ||||||| |||||| | || || | || || || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 143223 CGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAATA 143282 || | || || || || ||||| || || || || ||||| || || |||||||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 143283 ACACCAGTATGGCGAACTTCACCCATACCGATTTTCGAACCTTCAGCACGAATCATACCA 143342 || || ||| ||||||| | ||| || ||||| || ||| Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 143343 ACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGATTGAATTGGCCGTCTTA 143402 |||| ||||||||||| ||||||| | | || | | || | ||| || Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 2805972 Query 143403 TTAATTGACTTCAGGGAGTCAGCAGC-TTCGATAACCACACAGGAACTGAACTGCCTGGT 143461 ||||| || | ||| ||| || || || || | || ||||| |||||||| | || Sbjct 2805971 TTAATGGAATCAAGGCTGTC-GCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGT 2805913 Query 143462 AGGTGTTCTGGCGCCCGCCATGATGGGCGTGGGCAACGAAACCTGTCTTGTGGATACTGC 143521 || || | |||| | ||| || ||||| |||| ||||| || ||||| | || Sbjct 2805912 CGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGC 2805853 Query 143522 ATCATAAAAACG 143533 ||| || ||||| Sbjct 2805852 ATCGTAGAAACG 2805841 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 52801 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52860 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 1707341 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 1707282 Query 52861 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAGCCCG 52918 || | ||| ||||| |||| |||||||| || ||||||||||| | || || Sbjct 1707281 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 1707224 Query 52919 TAACACATAACGGGGATATTGTAATTATCAACCACT 52954 ||||| | || || |||| || ||| |||||| Sbjct 1707223 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 1707188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546459615693360