Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq122 805 0.0 >seq122 Length=4874392 Score = 805 bits (892), Expect = 0.0 Identities = 1248/1762 (71%), Gaps = 63/1762 (4%) Strand=Plus/Plus Query 22481 CTCACCCATTAACCACGGAGT-TAA-ACGGATGAGTGACTATCATCACGGCGTGCAGGTG 22538 ||||||| ||||||||||| ||| | |||| | | ||||| |||||||| | || Sbjct 199750 CTCACCCC--AACCACGGAGTGTAATAAAGATGGCTAATTATCACCACGGCGTACGCGTC 199807 Query 22539 CTGGAGATTAACGACGGCACCCGCGTCATTTCCACCGTATCCACTGCCATTGTCGGCATG 22598 | || || || ||||| |||||| |||||||| ||||||||| | |||||||||||| Sbjct 199808 GTTGAAATCAATGACGGAACCCGCAGTATTTCCACGGTATCCACTTCTATTGTCGGCATG 199867 Query 22599 GTCTGCACGGCCAGCG-ATGCGGATGCGGAAACC---TTCCCCCTCAATAAACCTGTGCT 22654 |||||||| || |||| |||| ||||| ||| ||||| ||||| | || ||||| Sbjct 199868 GTCTGCACTGC-AGCGGATGCTGATGCC---ACCGTATTCCCGCTCAACACGCCGGTGCT 199923 Query 22655 GATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGGTAAAAAAGGCACTCTGGCGGCATC 22714 ||||||| | |||||| || | | || |||||| | ||||| |||||| | | Sbjct 199924 GATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGTGTCAGCGGCACGCTGGCGAAAGC 199983 Query 22715 GTTGCAGGCCATCGCCGACCAGTCAAAACCGGTCACAGTTGTCGTGCGTGTGGAAGACGG 22774 | ||||||| || ||||||||| || ||||| || || || ||||| || || || || Sbjct 199984 GCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACGGTGGTGGTGCGCGTTGAGGAGGG 200043 Query 22775 CACCGGCGACGACGAGGAAACGAAACTCGCGCAGACCGTTTCCAATATCATCGGCACCAC 22834 | ||||| | || ||| | ||| ||||||||||||| || Sbjct 200044 T---GAAGACGAAGCGGCAACCAC-------CAG--------CAATATCATCGGCGGCAG 200085 Query 22835 CGACGAAAACGGTCAGTACACCGGACTGAAAGCCCTGCTGGCGGCAGAGTCGGTAACC-- 22892 ||| | ||||| | |||||||| ||||||| ||||| ||||| || | | ||| Sbjct 200086 CGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGCGCAGACCG--ACCTT 200143 Query 22893 GGTGTTAAACCGCGTATTCTCGGAGTGCCGGGACTGGACACCAAAGAGGTGGCTGTTGCA 22952 || ||||| |||||||||||||| |||||||| ||||| | || ||||| || Sbjct 200144 GGCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCACCGCG 200203 Query 22953 CTGGCATCAGTCTGTCAGAAGCTGCGCGCTTTCGGGTATATCAGCGCATGGGGCTGTAAA 23012 ||||| || |||| ||| |||||||||| ||||| |||||| || | ||||||||| Sbjct 200204 CTGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGGCTTACGGCTGTAAA 200263 Query 23013 ACCATTTCCGAGGTGA--AAGCCTACCGTCAGAATTTCAGCCAGCGTGAGCTGATGGTCA 23070 || | ||| | | ||| || || | || ||||||||||| ||||||||||| | Sbjct 200264 ACGGTAAGCGATGCGCTCAAG--TATCGCGAAAACTTCAGCCAGCGCGAGCTGATGGTGA 200321 Query 23071 TCTGGCCGGATTTCCTCGCATGGGATACGGTCACGAGTACCACCGCCACCGCGTATGCCA 23130 ||||||| || || |||| ||| | || || || || | | | || || ||||||| Sbjct 200322 TCTGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGAAACTGCCTATGCCA 200381 Query 23131 CTGCCCGTGCGCTGGGACTGCGTGCCAAAATCGACCAGGAGCAG-GGCTGGCATAAAACG 23189 | ||||| || || || ||||| ||||||||||| | || ||| |||||||||||||| Sbjct 200382 CCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGA-CAGCGGCTGGCATAAAACC 200440 Query 23190 CTGTCCAACGTCGGGGTAAACGGTGTTACCGGCATCAGCGCATCTGTATTCTGGGATTTG 23249 ||||| |||||||| || ||||| || |||||| | ||| || ||||||||||| || Sbjct 200441 CTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTCCGCCTCGGTATTCTGGGACCTG 200500 Query 23250 CAGGAGTCCGGCACCGATGCTGACCTGCTGAACGAGTCAGGCGTCACAACGCTGATTCGT 23309 ||| || || |||||||| || |||||||| || | ||||||| |||||||| || Sbjct 200501 CAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAAGCCAGCGTCACCACGCTGATCCGC 200560 Query 23310 CGTGACGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTT 23369 |||||||||||||||||||| ||||| ||||| ||||||||||||||| |||| Sbjct 200561 AAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGCTGTTCGCCTTT 200620 Query 23370 GAAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGG 23429 ||||||||||||||| | ||||||||| | |||||||| ||||| || ||||| |||||| Sbjct 200621 GAAAACTACACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATGCGCATATGTGG 200680 Query 23430 GCGGTGGACAAGCCCATCACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCC 23489 || |||||||| | || | |||||| | |||||||| | | ||| ||||| ||| Sbjct 200681 GCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCGGGATCAACGCC 200740 Query 23490 AAATTCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTTAGCGAA 23549 || ||||||||||||| | ||| ||| | ||| || | |||||||| |||| Sbjct 200741 AAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCCAACTGCTGGTACGACGAA 200800 Query 23550 GAATCCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTATGACTATACA 23609 ||||| ||| | ||| || ||||| || |||||||||||||| |||||||| Sbjct 200801 AGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACTACGACTATACC 200860 Query 23610 CCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATCACCGATAAATACCTGGCA 23669 |||||||| || || ||| | ||||||||||| ||||| || ||||| | |||||||| Sbjct 200861 CCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACAGCTACCTGGCG 200920 Query 23670 AATCTGGTCACCTCGGTTAACAGCAATTAAGGAGCCTGACCGATGGCAATGCCGCGCAAA 23729 || | | | | || || |||||| ||||||| | |||||| |||| ||| Sbjct 200921 AACTTCGCCGCTTCTGTGAACAGC---TAAGGAGAAACCCTCATGGCACTGCCTAAGAAA 200977 Query 23730 CTCAAGTTAATGAACGTCTTTCTGAACGGCTACAGCTATCAGGGCGTTGCAAAGTCCGTC 23789 || || | |||| | ||| | | | ||||||||||||| || | | || | Sbjct 200978 CTGAAATACCTGAATTTGTTTAACGATGCCAACAGCTATCAGGGTGTGGTGACCTCACTG 201037 Query 23790 ACGCTGCCAAAACTGACCCGTAAGCTCGAAAACTATCGCGGTGCGGGGATGAACGGCAGC 23849 |||||||| || ||| | || |||||||| || ||||| | || ||||||||| Sbjct 201038 ACGCTGCCGAAGCTGGCGCGCAAGCTCGACCCTTACCGCGGCGGCGGCATGAACGGCGTG 201097 Query 23850 GCACCGGTAGACCTCGGCCTTGATGACGATGCGCTGTCAATGGAGTGGTCGCTCGGTGGC 23909 || | | || ||||| || || ||||||||| |||||||| | || ||| Sbjct 201098 GCGCATATCGATAATGGCCTGGAAGATGATGCGCTGGATCTGGAGTGGACCATCTCCGGC 201157 Query 23910 TTCCCGGATTCGGTTATCTGGGAGCTCTACGCCGCAACCGGCGTGGATGCC---GTACCG 23966 || || || | | | ||| || | || |||| ||| || ||| Sbjct 201158 CTC---GA--CG----ACCGCGTGCT-----GAGCCAGTGGGGTGG-CGCCACGGTGCCG 201202 Query 23967 ATTCGTTTTGCTGGCTCTTACCAGCGCGACGATACAGGCGAAACGGTGGCCGTCGAGGTG 24026 | || ||| || || |||||||| ||||| || | ||| || | || || |||||| Sbjct 201203 CTGCGCTTTATGGGTTCCTACCAGCGTGACGACACCGACGAGACCATCGCGGTGGAGGTG 201262 Query 24027 GTCATGCGTGGCCGTCAGAAAGAAATCGACACCGGCGAGGGTAAACAGGGAGAAGACACC 24086 | |||| ||| || | | ||||| ||||||| | || ||||| || || | | Sbjct 201263 GAGCTGCGCGGCAAGCATCAGCAGTTCGACTTCGGCGAGAGCAAGCAGGGTGAGGAGAAC 201322 Query 24087 GAGTCGAAAATCTCCGTGGTCTGCACCTATTTCCGGCTGACGATGG-ACGGTAAGGAGCT 24145 || | |||||| || |||||||| | | ||||| | ||| |||| || | ||| Sbjct 201323 GAAACCAAAATCACCACCAAATGCACCTACTACAAGCTGA-GCTGGAACGGCAAAGCGCT 201381 Query 24146 GGTCGAAATCGACACCATCAACATGATTGAGAAGGTGAACGGCGTCGACCGGCTGGAGCA 24205 | | || ||||||||| |||||||| | |||| ||||||||| ||||||| |||| | Sbjct 201382 GATTGAGATCGACACCGTCAACATGGTCGAGATCGTGAACGGCATCGACCGCCTGGCCGA 201441 Query 24206 ACACCGCCGCAATATCGGCCTG 24227 ||||| || ||||||||| Sbjct 201442 GCACCGTAAGAACATCGGCCTG 201463 Score = 549 bits (608), Expect = 4e-152 Identities = 1129/1661 (68%), Gaps = 26/1661 (2%) Strand=Plus/Plus Query 17245 ACTGACCTTGAGCATATCAGCCAGAGTATCGGCGATATCCTGCGCACGCCGGTCGGCTCA 17304 ||||| | || |||||| ||||| | |||| ||||||| || ||| ||||| Sbjct 196590 ACTGATATCGACCATATCCGCCAGTCGGTGCGCGACATCCTGCTGACCCCGCAGGGCTCG 196649 Query 17305 CGGGTGATGCGTCGTGATTACGGCTCATTGCTGGCGTCAATGATTGACCAGCCGCAGACC 17364 ||||||||||| ||||| |||||||| ||||| || | || | ||||||||||||| | Sbjct 196650 CGGGTGATGCGCCGTGACTACGGCTCGCTGCTGTCGGCGCTGCTCGACCAGCCGCAGAAC 196709 Query 17365 CCGGCGCTTGAGTTGCAGATTAAGGTCGCCTGTTACATGGCGGTGCTGAAATGGGAACCC 17424 | |||| ||||||||| | ||||| ||||||||| ||||| ||||| || Sbjct 196710 GAGACGCTGCGCCTGCAGATTATGTCGGCCTGCTACATGGCGCTGCTGCGCTGGGAGCCG 196769 Query 17425 CGCGTCACCCT-GTCATCCGTCACCACTGAGCGCAGTTTTGACGGGCGAATGACGGTCAC 17483 ||| |||| || | || | | | | | ||| | |||||||| | ||| ||| | Sbjct 196770 CGCATCACGCTCGACAGCATCCGCTA-TCAGCCGGGGTTTGACGGCAGCATGGAGGTAGC 196828 Query 17484 GTTAACCGGCCAGCACAACGACACCGGCCAGCCACTTTCGTTAACCATCCCTGTGAGTTG 17543 | ||| |||| | |||| | | ||| || |||| || |||| || ||||||| Sbjct 196829 GCTAAGCGGCACCCGCAACCA----GTCCA--CATTTTCCCTATCCATTCCAGTGAGTTA 196882 Query 17544 AAACC-ATGCCGATTATCGACCTGAACCAGCTACCCGCACCGGATGTGGTCGAGGAGCTG 17602 | ||| ||| | | || || | | ||| ||||||| ||| | | ||||| | |||| Sbjct 196883 ACACCTATGGCCACGATTGATTTAAGTCAGTTACCCGCGCCGAACATCGTCGAAGCGCTG 196942 Query 17603 GACTTTGAAACCATTCTTGCCGAA-CGCAAG-GCGACACTGATTTCCCTTTACCCGGAAG 17660 || ||||| ||| | |||| | | ||||| ||| | |||||| | | || || | | Sbjct 196943 GATTTTGAGACCCTG-TTGCAGCAGCGCAAAAGCG-CGCTGATTGCGCGCTATCCCGCCG 197000 Query 17661 ACCAGCAGGAGGCGGTTGCCCGTACCCTGACGCTGGAATCCGAGCCTCTCGTCAAACTGC 17720 | ||||||||||| | ||||| ||| | || |||| || ||||| ||||||| |||| Sbjct 197001 ATAAGCAGGAGGCGATAGCCCGCACCTTAACCCTGGCGTCGGAGCCGATCGTCAAGCTGC 197060 Query 17721 TGGAGGAAAATGCTTATCGTGAGCTTATCTGGCGTCAGCGTGTGAATGAGGCCGCACGGG 17780 ||||||| || || || || ||| | ||| ||| ||||| | || || || || | Sbjct 197061 TGGAGGAGAACGCCTACCGCGAGGTGATCCTGCGCCAGCGCATTAACGAAGCGGCGAAAG 197120 Query 17781 CGGTAATGCTGGCCTGTGCCGCCGGTAATGACCTTGATGTGATTGGTGCCAATTACAACA 17840 | ||| |||| | ||| ||| | || || || | |||| | ||| || | Sbjct 197121 CCACCATGGTGGCATTCGCCAGCGGCAGCGATCTCGACCAGCTTGGGGTCAACAACGGCG 197180 Query 17841 CCACGCGCCTGATTATCACCCCGGCAGATGATTCGACCATCCCGCCGACACCGGCAGTGA 17900 ||| || ||| | | | || |||||| | || | |||||||| ||||| | Sbjct 197181 TCACCCGTCTGGTGCTGAAACCCGCAGATAACAGCACGCTGCCGCCGACCCCGGCGCGGC 197240 Query 17901 TGGAGTCTGACACCGATTATCGTCTGCGTATTCAGCAGGCGTTTGAGGGCTTAAGCGTCG 17960 | ||| ||| ||| | |||||||| || ||||| |||||||| | ||||| | Sbjct 197241 TTGAGAGCGACGACGACTTCCGTCTGCGCATCGCCCAGGCCTTTGAGGGGCTGAGCGTGG 197300 Query 17961 CCGGGTCGGTGGGAGCCTATCAGTATCATGGTCGCAGTGCCGACGGGCGTGTCGCGGATA 18020 | ||| ||| || |||||| | ||||| | ||||| ||||| || || || |||||| Sbjct 197301 CGGGGCCGGGCGGGGCCTATGAATATCACGCCCGCAGCGCCGATGGTCGCGTGGCGGATG 197360 Query 18021 TCTCTGTCACCAGTCCGTCTCCGGCCTGCGTCACTATCTCTGTGCTGTCACGTGAAAATA 18080 || | | || ||| ||||| |||||| ||||| ||| | |||||||| |||||| Sbjct 197361 TCACCGCCATCAGCCCGTCCCCGGCCGTGGTCACCATCACCGTGCTGTCGCGTGAAGGGC 197420 Query 18081 ACGGCGTCGCATCCGAAGACCTGCTGGCCGTGGTGCGTAAC---GCCCTTAATGGCGAGG 18137 ||||| || || || ||||||||||| || ||| || || |||| ||||| Sbjct 197421 GCGGCGAGGCCAGCGCTGAACTGCTGGCCGTCGT---CAACGCGGCGCTGAATGACGAGG 197477 Query 18138 ACGTCAGGCCGGTGGCCGACCGCGTGACCGTGCAGTCTGCCGCCATCGTTGAATACCAGA 18197 | || | |||||||| || ||||| | ||||||||| || ||||| || |||| Sbjct 197478 AGGTGCGCCCGGTGGCGGATCGCGTCAGCGTGCAGTCGGCAAAAATCGTCGAGTACCGCG 197537 Query 18198 TAAACGCCACGCTTTACCTTTACCCTGGTCCCGAAAGCGAACCCATCCGCGCTGCTGCCG 18257 | | |||||||| | || || || || || || || || |||||||| || | | Sbjct 197538 TTGAGGCCACGCTGTTTCTCTATCCCGGGCCGGAGGCGGAGCCGATCCGCGCCGCCTCGG 197597 Query 18258 TGAAAAAGCTGGAAGCGTACATCACGGCACAGCACCGGCTGGGGCGCGACATCCGTCTGT 18317 ||||| || | | | || ||| |||||||||||||| ||||| || Sbjct 197598 CAGCCCGGCTGGCGGCCTTTGTAAACGCCCAGTCGCGGCTGGGGCGCGATATCCGCAGGT 197657 Query 18318 CTGCCATTTATGCCGCGTTGCATGTGGAAGGCGTGCAGCGTGTCGAGCTGGCCGCA-CCT 18376 | || | ||||| ||| |||| || || || || ||||| || ||||||| |||| ||| Sbjct 197658 CAGCGCTGTATGCGGCGCTGCACGTCGAGGGTGTCCAGCGCGTAGAGCTGG-CGCAGCCT 197716 Query 18377 CTGGCTGACATTGTGCTCAACAGTACGCAGGCGTCTTTCTGCACCG-AATACAGCGTCGT 18435 ||||| | ||||| | | || |||||| | | |||||||| | ||| ||| Sbjct 197717 GCTGCTGATGTGGTGCTGGATAAAACCCAGGCGGCGTACTGCACCGCTACGCAG-ATCGC 197775 Query 18436 GACCGGAGGCTCGGATGAGTGATTCGCGCCTGCTGCCGACCGGCTCATCACCGCTTGAAG 18495 | ||||| || ||||||||| ||||||||||| |||||| |||| ||| || | Sbjct 197776 GGTAGGAGGTTCCGATGAGTGA---CCGCCTGCTGCCCGTCGGCTCGTCACAGCTCGAGG 197832 Query 18496 TTGCCGCCGCAAAAGCCTGTGCGGAAATTGAAAAAACGCCGGTCAGTATTCGTGAGCTGT 18555 | |||||||| ||||||||||| | | | |||||| | || |||| Sbjct 197833 TGGCCGCCGCCGAAGCCTGTGCGCGCCTGCAGCAGCTGCCGGTGCCGCTGCGCACCCTGT 197892 Query 18556 GGAACCCGGACACCTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGTCATTTTCGGTTG 18615 |||||||| | || |||||| ||||| || | || || ||| | | ||||| | Sbjct 197893 GGAACCCGCAGACTTGCCCGCTGCCGCTGCTCCCCTATCTCGCCTGGGCCTGGTCGGTGG 197952 Query 18616 ACCGCTGGGATGATAAGTGGCCGGAAGCGACAAAACGCGCTGTTATCCGCGATGCGTATT 18675 | ||||||||| | |||||||||||| ||| | || || || || || || | | Sbjct 197953 ATCGCTGGGATCAGGAGTGGCCGGAAGAGACCAGGCGTGCGGTGGTCGCCGCCTCGCAGT 198012 Query 18676 TCATTCACTGCCATAAGGGCACTATTGGTGCGATTCGCCGTGTGGTGGAGCCGCTCGGCT 18735 | || ||| ||| |||||||| || ||||| ||||| |||||||||||||| || | Sbjct 198013 TTATCCACCGCCGCAAGGGCACCATCTCGGCGATCCGCCGGGTGGTGGAGCCGCTGGGGT 198072 Query 18736 ATCTGATTGAGGTGAGGGAGTGGTGGCAGCTCAACGAGGAGCCGGGGACGTTCCGCATCG 18795 || ||||| | || ||||||||||| || ||| ||| || || |||||| | | Sbjct 198073 ATGTGATTAACGTCCATGAGTGGTGGCAAACCAGCGAACCGCCCGGCACCTTCCGCCTTG 198132 Query 18796 TTGTTGGCGTGCTTGAGCAGGGTATTACCGAGGAAATGTATCAGGAGCTGGAGCGTCTCG 18855 | | |||||||| || || ||| || | |||| | | || ||||||| || Sbjct 198133 ATATCGGCGTGCTGGAATCAGGCATTGATGAAGCGATGTTTAACGAAATGGAGCGGCTGA 198192 Query 18856 TTGCTGATGCAAAACCTGCAAGCCGCCATCTGACGGGACTG 18896 | | ||||||||||||| || |||||||| || || ||| Sbjct 198193 TCGGCGATGCAAAACCTGTCAGTCGCCATCTTACCGGCCTG 198233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93429850813194