Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq122 84.2 3e-11 >seq122 Length=4874392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 208/313 (66%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 181319 GATCATCAGTGTCGGCAAAGCCAACGGTTCGCG-GTCAAGCTGTTCCTTCACCTGATCGA 181377 ||| ||||| |||||| || ||||||||| |||| |||| | ||| || | Sbjct 3442147 GATAATCAGCTTCGGCAGGGCGCGCGGTTCGCGCGTCA-GCTGCAGGCGCGTCTGCTCCA 3442205 Query 181378 AGTGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCAAGAC 181437 ||| ||| |||| | |||||||| ||| | | | || | || || ||||| || Sbjct 3442206 GGTGGTTGCTGTACAGATGGGTATCGCCACCGGTCCAGACAAAATCACCCACTTCCAGGT 3442265 Query 181438 CACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCC 181497 | || | | | || |||| ||| ||| | ||||| |||||| ||||| || || | Sbjct 3442266 CGCACTGCTGGGCCATCATATGCACCAGCAAAGCGTAGCTGGCGATATTGAACGGCAGGC 3442325 Query 181498 CCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGTCATTGCGAACAT 181557 | | ||||| || ||| ||||||| | ||||||| || ||| | | ||| | Sbjct 3442326 CGAGGAAGATATCGCAGGAGCGCTGATACAGTTGGCAGGAGAGCTTGCCGTCCGCAACGT 3442385 Query 181558 AGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCC 181617 |||||||||| ||||||||| | || ||||| ||| | ||||||| |||| Sbjct 3442386 AGAACTGGAAGAACGCGTGGCACGGGGCCAGCGCCATCTCATCCAGTTCGCCGACGTTCC 3442445 Query 181618 AAGCCGAGACCAT 181630 | || || || || Sbjct 3442446 ATGCAGAAACGAT 3442458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661301824280040