Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq122 131 2e-25 seq83 125 8e-24 >seq122 Length=4874392 Score = 131 bits (144), Expect = 2e-25 Identities = 328/494 (66%), Gaps = 6/494 (1%) Strand=Plus/Minus Query 142788 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAAGTTATTCAAC 142847 || || |||||||| || | ||| ||| ||| || | ||||| || |||| | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 142848 TGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 142907 || ||||| ||||||||||| | | |||||| |||||||||| |||||||||||| Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 142908 ACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCGCCGCCC 142967 || |||| |||| ||||||| |||||| | || || | || || || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 142968 CGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAATA 143027 || | || || || || ||||| || || || || ||||| || || |||||||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 143028 ACACCAGTATGACGAA--CTTCACCCATACCGATTTTCGAACCTTCAGCACGAATCATAC 143085 || || || ||| ||||||| | ||| || ||||| || || Sbjct 2806091 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 2806034 Query 143086 CAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGATTGAATTGGCAGTCT 143145 | |||| ||||||||||| ||||||| | | || | | || | ||| || Sbjct 2806033 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 2805974 Query 143146 TATTGATTGACTTCAGGGAGTCTGCAGC-TTCGATAACCACGCAGGAACTGAACTGCCGG 143204 || || || | ||| ||| || || || || | |||||||| |||||||| || Sbjct 2805973 CGTTAATGGAATCAAGGCTGTC-GCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 2805915 Query 143205 GTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTGTCTTGTGGATACT 143264 || || || | |||| | ||| || || || |||| ||||| || ||||| | Sbjct 2805914 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATC 2805855 Query 143265 GCATCATAAAAACG 143278 ||||| || ||||| Sbjct 2805854 GCATCGTAGAAACG 2805841 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 51926 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 51985 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 1707341 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 1707282 Query 51986 AGCCAGAAG--TCTGGCTGAACCGGGAAATAATTGACCCCGAAAATCTGTTCTTAACCCG 52043 || | ||| ||||| |||| |||||| | || ||||||||||| | ||| || Sbjct 1707281 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 1707224 Query 52044 TAACACATAACGGGGATATTGTAATTATCAACCACT 52079 ||||| | || || |||| || ||| |||||| Sbjct 1707223 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 1707188 >seq83 Length=912621 Score = 125 bits (138), Expect = 8e-24 Identities = 306/462 (66%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 142819 CCAGACGTTCCATCATCAAGTTATTCAACTGGACGCCATAGTCCATATGTCTGATGCGGT 142878 ||||||||| ||| | || || | || ||||| || || | || | || |||| Sbjct 580202 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 580143 Query 142879 TTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATA 142938 | ||||||| || ||| || ||||| || | || |||||| |||||| ||||| | Sbjct 580142 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 580083 Query 142939 AAGGATAATAAGCAGTAGCAGCGCCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAG 142998 ||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 580082 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 580023 Query 142999 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGACGAACTTCACCCATACCGA 143058 |||| ||||| ||||| ||||||| ||| ||| ||||| | ||||||| || || Sbjct 580022 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 579963 Query 143059 TTTTCGAACCTTCAGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGA 143118 || ||| |||||||| ||| | ||||| ||||| || || || | ||| Sbjct 579962 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTG--TGA 579905 Query 143119 TA--TATTCGATGATTGAATTGGCAGTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTC 143176 | |||| | ||| | | | | ||| ||||| || | | | || || || Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 579845 Query 143177 GATAACCACGCAGGAACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGT 143236 ||||| |||||| || ||||| || || || || || | | || |||||||| || || Sbjct 579844 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 579785 Query 143237 GGGCAACGAAACCTGTCTTGTGGATACTGCATCATAAAAACG 143278 || || |||| | || || || ||||||||||| || Sbjct 579784 AGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 579743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548760235569480