Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028961.1 Length=55094 Score E Sequences producing significant alignments: (Bits) Value seq122 82.4 3e-11 >seq122 Length=4874392 Score = 82.4 bits (90), Expect = 3e-11 Identities = 214/317 (68%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 52161 CAGCCCTACATCGACTCACCCGAGCCACACCTGATGTACCAGTTCGTCGACCTGGCCGGC 52220 ||||| |||||||| ||||||||||| ||||| ||||||||| | |||||||| ||| Sbjct 2947180 CAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTTACCAGTTCCTTGACCTGGCTGGC 2947121 Query 52221 GGTCGGAAACTCAACGACGTCACGAAGGTCTACGACGACGGTCACCACTTCGCGCTGACC 52280 || || || || ||| || | | ||| | |||| | | ||| |||| ||| Sbjct 2947120 CCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGGACGATAAGCACATCGCTTACACC 2947061 Query 52281 GGTGCCCGCGGCTGCATGATCTACGTACACCG--CAGCGTCATCGAAACAGTCGGCGGCC 52338 || || ||| ||| | ||| ||||| ||||| || || | || |||||| Sbjct 2947060 GGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAGCG--ATTGAGAAGGTTGGCGGCT 2947003 Query 52339 TCGACCCAGAGTTCGGCGGCTGGGGATG--GGAACAC-CCCTCCTGGTCCGACCGCATCT 52395 ||||||| | | || ||| || ||| |||||| | ||||| | | ||||| Sbjct 2947002 TCGACCCGGTTTACG--GGCGCGGCATGTACGAACACTCTGACCTGGCGCTA-CGCATTC 2946946 Query 52396 ACAACGCCGGCCTTACCACATTCCGGTACGGCGACGTGTGC-GGCTCCAACAAGCTCATC 52454 | |||||||| | |||| | || || ||||| ||| |||||| | ||||| || Sbjct 2946945 ATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGT-TGCTGGCTCCGAAAAGCTGATT 2946887 Query 52455 CACTCCATGGACGAGCA 52471 |||| ||||||| || Sbjct 2946886 TACTCGCTGGACGAACA 2946870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176166097002336