Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq122 109 2e-19 >seq122 Length=4874392 Score = 109 bits (120), Expect = 2e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 543608 GAAGTCGACGTCAAAGTCGGGCATCGAAACACGTTCCGGGTTGAGGAAACGTTCGAACAG 543549 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || | | ||||| |||||||| || || ||||| || |||| || || Sbjct 543548 CAGGTCAAACTCCAGCGGGTCGAGGTCGGTAATTTTCAGTGCGTAGGCCACCAGAGAACC 543489 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || ||||| || || || || ||| |||| ||||||| ||| |||||| Sbjct 543488 GGCACCGGAACCACGTCCCGGCCCCACGGGCACGTCGTTATCCTTCGACCACTGGATGAA 543429 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGT 39743 || |||| |||||||| |||||| |||||||||||||||| || Sbjct 543428 TTCCATCACGATCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATCACGT 543379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160228082450450