Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029000.1 Length=162327 Score E Sequences producing significant alignments: (Bits) Value seq109 91.5 2e-13 seq122 82.4 8e-11 >seq109 Length=705085 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 64244 TTGATTTGGCAGTCCCTATTGGATTTGAACCAATGACCCGCGGCTTAGAAGGCCGCTGCT 64303 |||| ||| | |||||| ||||| ||||| |||||| ||||||||||||||| |||| Sbjct 321828 TTGAAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCT 321769 Query 64304 CTATCCAACTGAGCTAAG 64321 |||||||||||||||||| Sbjct 321768 CTATCCAACTGAGCTAAG 321751 >seq122 Length=4874392 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 64249 TTGGCAGTCCCTATTGGATTTGAACCAATGACCCGCGGCTTAGAAGGCCGCTGCTCTATC 64308 |||| | ||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| Sbjct 814417 TTGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATC 814358 Query 64309 CAACTGAGCTAAG 64321 ||||||||||||| Sbjct 814357 CAACTGAGCTAAG 814345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519277743860760