Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq122 232 8e-56 seq83 197 2e-45 >seq122 Length=4874392 Score = 232 bits (256), Expect = 8e-56 Identities = 455/667 (68%), Gaps = 18/667 (3%) Strand=Plus/Minus Query 76934 GTTGACGTGGTGAGCGTTGAAAATATATTTGCGTCCGGTCTGTGCGCGTTCCTGAACAAG 76993 |||| ||||| | |||| ||| || | || ||||| ||||||||||| | | Sbjct 2806521 GTTGCAGTGGTCAACGTTCTGAATGTAGATACGGCCGGTAGAGGCGCGTTCCTGCATCAT 2806462 Query 76994 CAACTGGAACAAATCTGCTGCTTTAATGCGTTTCTTGCGTACCGTTGGGTCTTTTTCCAA 77053 || | ||||| |||| | || || | ||| | |||||| | | |||||| || | Sbjct 2806461 CAGCGAGAACAGATCTACCGCCTTCACGCGCTGCTTGCGGATGCTGTCGTCTTTCTCGTA 2806402 Query 77054 ACTGGTATAGAGTTCTTCGAACTCAGTCTGATCAGCTTGATAGAAAGCATCATACAGGCG 77113 |||| || || || |||||| |||||| || || |||| || ||||||| || Sbjct 2806401 TTTGGTGTACAGGCGCTCAAACTCATCCTGATCGGC--GA-AGAACGCGTCATACAAGCC 2806345 Query 77114 ATCATTTGCAACGTCAG---GGCTGAACAGTGTGATGTAATCGTTATTGATTAAACGCTT 77170 | ||| |||| | |||||||||| || || | || || | | |||| Sbjct 2806344 AG-----GCA-CGTCGGACGGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTG 2806291 Query 77171 ATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAAC 77230 |||||||| | ||| ||||| ||||| || |||| ||||| | ||||| ||||| Sbjct 2806290 ATACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAAC 2806231 Query 77231 ACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATA 77290 || |||||| ||||| ||||||||| |||| ||||||| |||||| || || || | Sbjct 2806230 GCCGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAA 2806171 Query 77291 CAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAAT 77350 || || || ||||| || || ||||| || || || ||||| || ||||| ||||| | Sbjct 2806170 CAGGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAA 2806111 Query 77351 ATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACC 77410 || || ||||||| || ||| || || | ||||||||| || ||||| || Sbjct 2806110 GTGCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCC 2806051 Query 77411 CATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCAC 77470 || || || ||| | || || |||| |||||||| || || || |||| |||||||| Sbjct 2806050 CAGCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCAC 2805991 Query 77471 GATCGC---AGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTAC 77527 ||||| ||||| || || | ||| | || || || | ||||||| ||| Sbjct 2805990 AATCGCGCTGGAGGT---GGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTAC 2805934 Query 77528 GCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGA 77587 ||| | ||||| ||||| || || ||||| || | |||||| ||||| || | ||| Sbjct 2805933 GCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGA 2805874 Query 77588 CAGCTTA 77594 | |||| Sbjct 2805873 AATCTTA 2805867 Score = 118 bits (130), Expect = 1e-21 Identities = 248/365 (68%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 142013 ACGGAGCCAGCACTTTATCAA--CGTTTGCAAAGGTTGTCCCGCCGTACTGGTGAGAAGC 142070 |||| |||||||||| ||||| || || || ||| || || ||||| || || Sbjct 3820288 ACGGCGCCAGCACTTCATCAATACGGTT--AATGGTGGTGCCCCCGTAAATATGGCTGGC 3820231 Query 142071 AATCTGTGCGGTGATCTGTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGGTTC 142130 | ||| ||| ||||||| || | | || || || ||| || || || ||||| Sbjct 3820230 GACCTGGGCGATGATCTGCGCGGTGACGGCGGTGGCGGTGGAGATCGACTTAGGCGGTTC 3820171 Query 142131 GATGTCTGCGTTACCCATCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAGACA 142190 ||| || ||||||||||| |||||||| | | |||||| || || || | ||| Sbjct 3820170 GATCTCGGCGTTACCCATTTTGAAGCCGTGCGTCAGCATGCCCCGCAGGTCGATCAGCAT 3820111 Query 142191 GCAGTTTGTGTATGGCGTGAACGGGCTGTAATCCAGATCATGATAGTGGATGTCGCCGGA 142250 |||||| || ||||| ||| || ||||| ||||||||||| |||||| Sbjct 3820110 GCAGTTAAACATCGGGAAAAACGGCGAGTAGTCGAGATCGTGATAGTGGATCTCGCCGCG 3820051 Query 142251 GTCATGCGCTTCTACGATATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCGCTAC 142310 ||||| || || | || ||| || ||||| | ||||||| | || || || || Sbjct 3820050 CTCATGGGCGCTGACCACATCACGCGGCAGCATATGCTGACGGGCGTAGTGTTTGGCGAC 3819991 Query 142311 AATACCCGCCAGCAAATCGCGCTGTGTCGGGAATACCCTTGC-GTCTTTGTTCGCGTTCT 142369 || || ||||||| ||||||||| || ||| || |||||| || || || || || | Sbjct 3819990 GATCCCGGCCAGCAGATCGCGCTGAGT-GGGGATCACCTTGCTATCCTTATTGGCATTTT 3819932 Query 142370 CGTTG 142374 | ||| Sbjct 3819931 CATTG 3819927 Score = 116 bits (128), Expect = 4e-21 Identities = 327/488 (67%), Gaps = 18/488 (4%) Strand=Plus/Minus Query 74796 CCAACTAGGTAAGAACTCACTTCAACCTCTTGCGGGGCTACCTGAACGTTGTCAGACTTC 74855 || || |||||||| || ||||| || || ||||| || ||||| ||||| || ||| | Sbjct 2808714 CCGACCAGGTAAGAGCTGACTTCCACTTCCTGCGGAGCAACCTGCACGTTATCGGACACC 2808655 Query 74856 AACCATTTGTTCATCCACGGGTACGGGTTAGGACTCGGTTTAAACGG-AGACTGTAACCC 74914 | ||| ||| ||||||||| |||||| | | | ||||||||| ||| | | || Sbjct 2808654 AGCCACGAGTTGATCCACGGGATCGGGTTCGAGCGGGTTTTAAACGGCAGA-TCCAGACC 2808596 Query 74915 AACCGCTCGCATACGTTGGTCGGTTAAGTGTTCGATGTAG-GCGATTGTACTTTTCAGTG 74973 ||| || |||||| || ||| | || || ||||| || | | | | | | Sbjct 2808595 AACAGCGTTCATACGGATGTTGGTGATGTACTCAATGTACTGCCACAGAATATCTTTAT- 2808537 Query 74974 TCACGCCGTCAACATC--ACCGATGCTGAATAAGTGTTCAGCCCATTCTTTTTCCTGCTC 75031 ||| ||| | ||| |||| |||||| | | ||| ||||| ||||| |||||||| Sbjct 2808536 TCAGGCCA--ATCATTGAACCGCCGCTGAACAGATATTCCGCCCACTCTTTCTCCTGCTC 2808479 Query 75032 GTAAACTTCGAGGAAAATCTTTGTTGCT-TCTTCTTCGTACTGATACGCGATTTCTGCCA 75090 | | | | ||| | | || || |||| | ||| | || || || |||| Sbjct 2808478 GGCAGCCAGCACGAACAGATC-GTAGCACTCTTGACGGCACTCTTTAGCAATCTCGGCCA 2808420 Query 75091 TTTCTGGGTCATCTTTACCCATCTGC----CAGAGTCGGATCTTGCTTTGAGTACCTTTC 75146 |||| || || |||| |||| |||| ||| || | |||| |||| || || Sbjct 2808419 TTTCCGGATCGTCTTC-CCCA-CTGCGCAGCAGGTTCAGCATATGCT--GAGTGCCGGTC 2808364 Query 75147 TGATGAAGTGCTTCATCACGGGCAATCAGACGCATGATCTTCGCGTTACCTTCCATCTTG 75206 | || || |||||||| ||||| ||||| ||||| || || || ||||||||| Sbjct 2808363 AGGTGCAGAGCTTCATCGCGGGCGATCAGCTTAATGATTTTGGCATTGCCTTCCATCAGT 2808304 Query 75207 CCCTGTTCGGCAAAGTTGAAAGTAAAGGTAAACGAGACATAGAAACGGATCGCTTCCAGA 75266 | | ||||||||| ||||| ||| || ||| || || |||||||||||||| Sbjct 2808303 TCGCGCTCGGCAAAGGCGAAAGAGCAGGCGAAGCTGACGTAAAAGCGGATCGCTTCCAGC 2808244 Query 75267 GCGTTGAC 75274 |||||||| Sbjct 2808243 GCGTTGAC 2808236 Score = 113 bits (124), Expect = 5e-20 Identities = 198/284 (70%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 75507 GCCGGATCGATATGCAGGTTACGCTGAATATGCGTATA--ACTGCGACTGTGAATTGTTT 75564 ||||| ||| || | ||||| |||||| || || | |||| ||| || || | Sbjct 2808039 GCCGGGTCGTTAACGATATTACGAATAATATGGGTGTACGAACGCGA--GTGGATAGTCT 2807982 Query 75565 CACTGAAAGCCCATGTTTCGATCCACGTTTCCA-TTGAAACATCAGAGGCAATCGGGAGA 75623 | ||| ||||| ||||| ||||| ||||||| || ||| ||| | ||| || Sbjct 2807981 CGGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCCGGGATC-GAGATCAGCGGCAGC 2807923 Query 75624 AACGCCAGGTTAGGGCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTA 75683 ||||||| ||| |||| |||||||||||| | || | ||| || ||||| | |||||| Sbjct 2807922 AACGCCACGTTCGGGCTGCGTCCCTGAATAGAGTCCAGCAGAGTCTGATACTTCAGGTTG 2807863 Query 75684 GAATCAAAAATGATTTTTTCGTGTTCCGGCATTTTTGCATACTGCATACGGTCTATCGAC 75743 ||| ||| ||||||||| || |||| ||| | ||||| || ||| Sbjct 2807862 CTGATAAAGATGTGTTTTTCGTGCTCTGGCAGCGCCTGATAGTCAATACGATCGCGCGAG 2807803 Query 75744 AGATCCACTTCTTCCGGTCGCCAGAAGAATGACAGTTGTTTTTC 75787 | |||||||||||||| ||||||||||| || || || ||||| Sbjct 2807802 ACGTCCACTTCTTCCGGGCGCCAGAAGAAAGAGAGCTGCTTTTC 2807759 Score = 111 bits (122), Expect = 2e-19 Identities = 189/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 78422 TGTAGATATGAACATCACCACCTGTCCATACCAGATCACCAACTTCGTACCCGCAAATAT 78481 |||| | ||| ||| ||||| ||||| || | |||||| ||||| |||| | Sbjct 3442215 TGTACAGATGGGTATCGCCACCGGTCCAGACAAAATCACCCACTTCCAGGTCGCACTGCT 3442274 Query 78482 CAGCGATAATATGCGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGA 78541 || || |||||| ||| | ||||||| ||||||||||||||||| || | ||||| Sbjct 3442275 GGGCCATCATATGCACCAGCAAAGCGTAGCTGGCGATATTGAACGGCAGGCCGAGGAAGA 3442334 Query 78542 CATCAACCGAACGCTGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGA 78601 ||| || ||||||||| || || || || |||| ||| |||||||| Sbjct 3442335 TATCGCAGGAGCGCTGATACAGTTGGCAGGAGAGCTTGCCGTCCGCAACGTAGAACTGGA 3442394 Query 78602 AGAAACAGTGACACGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAA 78661 |||| ||| ||||| || ||||| | |||||| || | ||||||||| |||| Sbjct 3442395 AGAACGCGTGGCACGGGGCCAGCGCCATCTCATCCAGTTCGCCGACGTTCCATGCAGAAA 3442454 Query 78662 CGATGATCCCGCGATCGTCTGGCGTGGTTTTCAG 78695 ||||||| | ||| ||| || | ||||||| Sbjct 3442455 CGATGATGCGGCGCGAGTCCGGGTCGCTTTTCAG 3442488 >seq83 Length=912621 Score = 197 bits (218), Expect = 2e-45 Identities = 300/426 (70%), Gaps = 6/426 (1%) Strand=Plus/Minus Query 77165 ACGCTTATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATT 77224 ||| | |||||| | | ||| | || ||||| ||||| |||||||| | ||||||| Sbjct 580198 ACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACC 580139 Query 77225 CTCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGG 77284 |||||||| ||| |||||||| || | | | |||||| |||||| ||||| || || Sbjct 580138 TTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGG 580079 Query 77285 ATAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGT 77344 ||| ||| || || ||||| || || ||||| ||||| || || ||||| || || || Sbjct 580078 GTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGT 580019 Query 77345 CTGAATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTT 77404 ||| | ||||| |||||||||| || ||||| | |||||||||||||||||| Sbjct 580018 CTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGG 579959 Query 77405 AGAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATA 77464 || | || ||||| | |||||||| | |||||| || ||||||||||||| || Sbjct 579958 GCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTA 579899 Query 77465 CTTCACGATCGC---AGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAAT 77521 || ||||| || ||| || || || | ||| | | ||| || | || || Sbjct 579898 TTTAACGATAGCACTAGAAGT---GGCGTTGATAGAGTCTAAGCTATCGCCACACTCGAT 579842 Query 77522 CACTACGCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGG 77581 | ||||| | || || || || || || || || || ||||| || |||||||| Sbjct 579841 AAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGG 579782 Query 77582 TAACGA 77587 ||| || Sbjct 579781 TAAGGA 579776 Score = 116 bits (128), Expect = 4e-21 Identities = 289/432 (67%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 75996 GCACCGTCGCGGGTGTTGTGATAATACAGAGTTTTCACGCCGTAGTAGTTCGCATAAAGC 76055 ||||| || || ||||| ||||| || || |||||||||||| | | | ||| ||| Sbjct 581373 GCACCATCACGCGTGTTTTGATAGTAAAGCGTTTTCACGCCGAATTTATACGCGGTCAGC 581314 Query 76056 AGGTCAT-CAATGATGGTTTCAGATTTCACTTTACCATCTGGGAAGTTAGCCGGATCATA 76114 ||||| | || | | | | || | ||||| || | | | | | |||||| || Sbjct 581313 AGGTCTTTCAGTAACTGCTGCATCGGT-ACTTTCCCGCCAGTGTAACGTGTCGGATCGTA 581255 Query 76115 GTTGGTGTTTGCAGAGATCGCTTGATCAACAAACTTCTGCATAACAGCAACATGAGACAG 76174 ||||||||||| |||||| ||||| || |||||||||||||||| | ||| | | Sbjct 581254 GTTGGTGTTTGAAGAGATAGCTTGGTCGACAAACTTCTGCATAATCCCGACAAGTTGTAA 581195 Query 76175 ATAACCTTTATTACCGCGTTTTGCCATTGTCCAGAGATAATCATAGAAATCAATCTGGTC 76234 ||||| | ||| | |||| ||| || ||||| ||| | | | Sbjct 581194 GTAACCATCGTTAGAAGG------CATTTCCCATAGCAGCTCATACTGATCT-TGTAAGC 581142 Query 76235 GTTCTGGTTC-GGTACTACCTG--GTTGAATGAACCTTCTTTCGAAGATTTCACACTCAC 76291 | || || || || ||||| || ||| ||| |||||||| | ||| | ||| || Sbjct 581141 GCTCATACTCTGGAACGACCTGACGTAAAAT--ACCGTCTTTCGAGGCTTTGATACTGAC 581084 Query 76292 AGGGCCGCGAGGCGGTTCAATCCCGTTTGTTGAGTTGCTTACTTGAGAACTACTCTCACA 76351 | |||||| || || || || |||||||| | || | || ||| | || | Sbjct 581083 ATAGCCGCGTGGAGGCTCGATACCGTTTGTAGCATTAGAAATCTGCGAAGAGGTTTCTGA 581024 Query 76352 TGGCATTAAAGCAGAAAGAGTTGAGTTACGCAAGCCATATTTTTTGATTTCGCCGCGCAA 76411 |||||| || || ||||| ||||||||||| ||||||| | | |||||||| | || || Sbjct 581023 TGGCATCAATGCTGAAAGCGTTGAGTTACGTAAGCCATGTGTCTTGATTTCTTCACGTAA 580964 Query 76412 CCATTCCCAATC 76423 | ||||||||| Sbjct 580963 GCTTTCCCAATC 580952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568429095623040