Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq122 307 2e-79 >seq122 Length=4874392 Score = 307 bits (340), Expect = 2e-79 Identities = 736/1096 (67%), Gaps = 28/1096 (3%) Strand=Plus/Plus Query 10412 CACGATCGATTTATCGCAGTTACCGCCGCCCGTGGTGGTAGAACCGCTGGACTTCGAAAC 10471 |||||| |||||| |||||||| |||| | || ||| ||||||| || || || Sbjct 196894 CACGATTGATTTAAGTCAGTTACCCGCGCCGAACATCGTCGAAGCGCTGGATTTTGAGAC 196953 Query 10472 GCTTTTCGCGCAGCGCAAGGCCGCATTTATTGCGATGTACCCGGAAGACGAGCAGGAAGA 10531 || || ||||||||| ||| | |||||| || || | || ||||||| | Sbjct 196954 CCTGTTGCAGCAGCGCAAAAGCGCGCTGATTGCGCGCTATCCCGCCGATAAGCAGGAGGC 197013 Query 10532 GATCGCCCGCACGCTTGAGCTTGAA-TCGGAGCCGATCACCATGCTGCTGGAAGAGAATT 10590 ||| |||||||| ||| | | || |||||||||||| || ||||||||| ||||| Sbjct 197014 GATAGCCCGCAC-CTTAACCCTGGCGTCGGAGCCGATCGTCAAGCTGCTGGAGGAGAACG 197072 Query 10591 GCTATCGCGAATTGCTGTTGCGCCAGCGGGTGAATGAAGCGGCCCGCGCGGTGATGCTGG 10650 ||| ||||| || | |||||||||| | || |||||||| || ||| ||| Sbjct 197073 CCTACCGCGAGGTGATCCTGCGCCAGCGCATTAACGAAGCGGCGAAAGCCACCATGGTGG 197132 Query 10651 CTTATTCCACGGATAGCGATCTGGATAATCTGGCGGTCAATTTCAACGTTGAACGTCTGA 10710 | | ||| | |||||||| || | || | |||||| | ||| |||||| Sbjct 197133 CATTCGCCAGCGGCAGCGATCTCGACCAGCTTGGGGTCAACAACGGCGTCACCCGTCTGG 197192 Query 10711 CCATTCAGGAA---GAAGACGACAGCGTTACTCCGCCAATTGAAGCCGTGGTGGAGTCAG 10767 | | | || | ||| ||||| ||||| | || | | ||| | Sbjct 197193 ---TGCTGAAACCCGCAGATAACAGCACGCTGCCGCCGACCCCGGCGCGGCTTGAGAGCG 197249 Query 10768 ACGCGGATTTACGCACGCGTACCCAGCAGGCTTTTGAAGGTCTGAGCGTGGCCGGGCCAA 10827 ||| || || || ||| | | ||||| ||||| || ||||||||||| ||||| Sbjct 197250 ACGACGACTTCCGTCTGCGCATCGCCCAGGCCTTTGAGGGGCTGAGCGTGGCGGGGCCGG 197309 Query 10828 CGGCGGCGTATGAGTTTTGGGGGCGTTCGGCTGACGGGCGCGTAGCTGATATTTCGGCGG 10887 | ||| ||||| | | | || || || || ||||| || ||| | | || Sbjct 197310 GCGGGGCCTATGAATATCACGCCCGCAGCGCCGATGGTCGCGTGGCGGATGTCACCGCCA 197369 Query 10888 TCAGTCCTACGCCTGCCTGCGTCACCATTTCGGTGCTGTCGCGCGAGGGTGACGGAACGG 10947 |||| || | || ||| |||||||| | ||||||||||| || || ||| || Sbjct 197370 TCAGCCCGTCCCCGGCCGTGGTCACCATCACCGTGCTGTCGCGTGAAGGGCGCGGCGAGG 197429 Query 10948 CCAGCGATGATCTGCTTTCCGTTGTCGCTGCCGCCCTGAACGATGAAGAGGTGCGCCCGG 11007 |||||| ||| ||||| |||| ||| || || ||||| || || ||||||||||||| Sbjct 197430 CCAGCGCTGAACTGCTGGCCGTCGTCAACGCGGCGCTGAATGACGAGGAGGTGCGCCCGG 197489 Query 11008 TGGCCGACAGGGTAACGGTGCAGTCTGCGGACATTGTGCCGTACCAGATTGATGCAACGC 11067 |||| || | || | |||||||| || | || || ||||| |||| || |||| Sbjct 197490 TGGCGGATCGCGTCAGCGTGCAGTCGGCAAAAATCGTCGAGTACCGCGTTGAGGCCACGC 197549 Query 11068 TTTACATCTATCCGGGGCCGGAAGCTGAACCCGTCCGGCAGGCATCGG-AGCAGCAGTTA 11126 | | ||||||| |||||||| || || || |||| || |||| ||| | | | Sbjct 197550 TGTTTCTCTATCCCGGGCCGGAGGCGGAGCCGATCCGCGCCGCCTCGGCAGC-CCGGCTG 197608 Query 11127 CAGGCGTATATTACCGCGCAGAATCGCTTAGGGCGCGATATCCGTATTTCTGCTATCTAC 11186 ||| | | | | ||| ||| || | |||||||||||||| | || || | || Sbjct 197609 GCGGCCTTTGTAAACGCCCAGTCGCGGCTGGGGCGCGATATCCGCAGGTCAGCGCTGTAT 197668 Query 11187 GCCGCCCTGCACGTCGAAGGCGTCCAGCGCGTTGAACTGGCGCAGCCTGTTGCGGATATC 11246 || || ||||||||||| || ||||||||||| || ||||||||||||| ||| ||| | Sbjct 197669 GCGGCGCTGCACGTCGAGGGTGTCCAGCGCGTAGAGCTGGCGCAGCCTGCTGCTGATGTG 197728 Query 11247 GTGCTGAGTGACTACCAGGCATCGCACTGCACCGAATACAC-CATAACGGTGGGTGGTTA 11305 |||||| | | |||||| || ||||||||| ||| | || |||| || |||| Sbjct 197729 GTGCTGGATAAAACCCAGGCGGCGTACTGCACCG-CTACGCAGATCGCGGTAGGAGGTTC 197787 Query 11306 CGATGAGTAATGACTTGTTACCACCCAGCGC----CAGC-CGAATGGAGCGCGTCGCCG- 11359 |||||||| | | || | || | || | |||| ||| || | || ||||| Sbjct 197788 CGATGAGTGACCGCCTGCTGCCCGTCGGCTCGTCACAGCTCGA--GGTGGCCGCCGCCGA 197845 Query 11360 CGCGCGTCTGCGCCTCGTTGGGAGAAG-TGCCCGTGCCATTGCGCCAGTTGTGGAACCCG 11418 || || |||||| | || || |||| ||||| ||||| ||||||||||| Sbjct 197846 AGCCTGTGCGCGCCT-----GCAGCAGCTGCCGGTGCCGCTGCGCACCCTGTGGAACCCG 197900 Query 11419 TGGACGTGTCGGGCTG-ATCTGCTGCCCTATCTGGCGTGGGCCTTCTCCGTTGATCGCTG 11477 ||| || | |||| ||||| |||||||| || ||||||| || || |||||||| Sbjct 197901 CAGACTTG-CCCGCTGCCGCTGCTCCCCTATCTCGCCTGGGCCTGGTCGGTGGATCGCTG 197959 Query 11478 GGATGAGGCTTGGCCG 11493 |||| ||| |||||| Sbjct 197960 GGATCAGGAGTGGCCG 197975 Score = 116 bits (128), Expect = 8e-22 Identities = 610/954 (64%), Gaps = 61/954 (6%) Strand=Plus/Minus Query 19474 AACATATTGAAATATTTGAGTTTCTTAGGCAGTGCCATAAGCGCCCCCGGTTAGTTGTTC 19533 |||| ||| | ||||| |||||||||||||||||||| || | | |||| ||||| Sbjct 200997 AACAAATTCAGGTATTTCAGTTTCTTAGGCAGTGCCATGAGGGTTTCTCCTTAGCTGTTC 200938 Query 19534 ACTGCGCTGGAAAACGTAGCGAAGTAGGTATCAGTAAACGTCTGGATCAGGCTGAGATTT 19593 || | || || | || | |||| | || |||| ||| |||| | |||| | Sbjct 200937 ACAGAAGCGGCGAAGTTCGCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCT 200878 Query 19594 TCCAGCGGTGGAACCGGCGTATAGTCGTAATTAATGGTCAG-TTGAC--CATTGCGCAGG 19650 |||||||| || ||||| ||||||||||| | || ||| ||| | | || |||| Sbjct 200877 TCCAGCGGCGGCACCGGGGTATAGTCGTAGTCGATATACAGCTTGCCGGCTTT---CAGG 200821 Query 19651 TTTTCCGTGGTGTT--CGGTTCAGGGTCGTACCAGCAGCGGGCGCCCAGCAGTTTGCCTT 19708 | ||| | |||| || || ||||||||||||| |||||||||||| | || Sbjct 200820 CTCTCCTGGCTGTTGGCGCTT--TCGTCGTACCAGCAGTTGGCGCCCAGCAGATAACC-G 200764 Query 19709 CCGTCACATAAGCGGTC--AGCTTCTTGTTGATGCCGTCCACGATGTCCTTAACCAGCGA 19766 ||| || ||| | | ||| |||||| ||| | | ||||| ||||||| Sbjct 200763 GCGT-TGATCAGCTCACGGAACTTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGT 200705 Query 19767 CGGGGTAAGCGGTTTATCAACATAGTAGAAGTGGGCTTCAGCGACGGTATCAGCAACGAT 19826 ||| || ||||| || || | | || || || || | ||| || || | | Sbjct 200704 CGGCGTCAGCGGCTTGTCGTTGGCCCACATATGCGCATCGGCCATGGTGTCGGCGATCAC 200645 Query 19827 CTGCGCGGTTCGGGTATAACTTTCGAAGATGTA---CGTTTCCTTGTCGCAGGTACGCGA 19883 |||||| | ||||| || |||| ||| | | || || | | ||||| || Sbjct 200644 CTGCGCCGAGCGGGTGTAGTTTTCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTT 200585 Query 19884 TCCCCAGATGCGGTAGCCGTCCTGCTTGATCAGCGTGGTAACGCCTGCCGCATTCAGTTC 19943 ||||||| |||| | ||||| | |||||||||||| |||| || ||||||| Sbjct 200584 GCCCCAGAAGCGGAAACCGTCTTTGCGGATCAGCGTGGTGACGCTGGCTTCATTCAG--- 200528 Query 19944 GTCAGCGTCGGTATCGGTGC---CCTGCAACGTGAAATAGATGTCCCGATCC----ATCC 19996 ||| |||| |||||| | ||||| | | ||| | |||| | | | Sbjct 200527 --CAG-ATCGGCATCGGTCCCCACCTGCTGCAGGTCCCAGA-ATACCGAGGCGGAAACGC 200472 Query 19997 CAAGCACGTTATTAACGGGCACGTTGGAAATGGTTTTATGCCAGCC-CTG-CGTTGCGTC 20054 | |||| || ||| ||||| || | ||||||||||||||| ||| |||| || Sbjct 200471 CGGTCACGCCGTTGACGCCGACGTTCGACAGGGTTTTATGCCAGCCGCTGTCGTT--ATC 200414 Query 20055 GATTCTGGCGCGCATCCCAACAGCATGAGCGCCTACGGGCACGGTGGCATTGG------C 20108 |||| ||||||||| || ||| || |||| ||||||||| || | Sbjct 200413 GATTTTGGCGCGCAGGCC--------GAGGGC--GCGGG--CGGTGGCATAGGCAGTTTC 200366 Query 20109 CCCAGCGTT------GGTGTCGTAGCAGATGAAATTAGGCCAGATGACCATCATTTCACG 20162 | | ||| | ||||| || || || | |||||||| ||||||| || || Sbjct 200365 CGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCGGGCCAGATCACCATCAGCTCGCG 200306 Query 20163 CTGTGCAAACTGTTCGCGGTAGGTCTTCGCTTCGGCAATCGTATTGCAGCCGTTCGCGGC 20222 ||| || | |||||| || | ||| ||| | ||| || ||||||| || | Sbjct 200305 CTGGCTGAAGTTTTCGCGATACTTGAGCGCATCGCTTACCGTTTTACAGCCGTAAGCCGA 200246 Query 20223 TACATATGCGAACGCGCGCAGTTTTTCCGCA-ATGACACCGAGTTGTGCGGCTACTGCTT 20281 | ||| |||| |||||||| | | ||| || | | || | ||| ||| | Sbjct 200245 GATATAGCCGAAGGCGCGCAGCTGCT-GGCAGATTGCCGCCAGCGCGGTGGCCACTTCCA 200187 Query 20282 TCGTATCAAGTCCGGGAACAGCCAGGACGCGCGGGCGTACGCCTACGCGCATTTCGGCAG 20341 || ||| || || || || | || | ||||| ||||| | | | | || | Sbjct 200186 GCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCTTAACGCCAAGGTCGGTCTGCGCCG 200127 Query 20342 ACAGCAGCGCGTACATGCCGGTAAAGCGCCCGTTTGCATCGGTGCCGCCAATGA 20395 |||||||| | ||| ||||| |||| ||||| |||||| ||||||| |||| Sbjct 200126 CGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAGCATCGCTGCCGCCGATGA 200073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107099234102826