Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq122 80.6 9e-11 >seq122 Length=4874392 Score = 80.6 bits (88), Expect = 9e-11 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 18132 GAGATCGCCGAGATCAC-CTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCGT 18190 ||||||||||||||| | | | |||| ||| | || || | |||||| | | | || Sbjct 4793556 GAGATCGCCGAGATCTCACGCTCGCTT-AAGGCACTGGCGAAAGAGCTGCAGGTGCCGGT 4793614 Query 18191 CGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAG-AGCAGAGAGGATAAGCGACCTCTTC 18249 || ||||||||||||||| || | | ||| ||| | | |||||||| || | Sbjct 4793615 GGTGGCGCTGTCGCAGCTTAACCGCTCCCTGGAGCAGC-GTGCCGATAAGCGCCCGGTCA 4793673 Query 18250 TCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTTGT 18309 ||| ||||| || || ||||| | ||||||||||| |||||| ||||| ||| | | Sbjct 4793674 ACTCCGACCTGCGTGAATCCGGCTCCATCGAGCAGGATGCCGACCTGATCATGTTTATCT 4793733 Query 18310 TCCGTGA 18316 |||||| Sbjct 4793734 ACCGTGA 4793740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162512712522734